//JAVA TO C# CONVERTER WARNING: Method 'throws' clauses are not available in .NET:
//ORIGINAL LINE: private void buildFilter(VariantContext vc) throws IOException
private void buildFilter(VariantContext vc)
{
if (vc.Filtered)
{
encodeStringsByRef(vc.Filters);
}
else if (vc.filtersWereApplied())
{
encodeStringsByRef(Collections.singleton(VCFConstants.PASSES_FILTERS_v4));
}
else
{
encoder.encodeTypedMissing(BCF2Type.INT8);
}
}
// --------------------------------------------------------------------------------
//
// implementation functions
//
// --------------------------------------------------------------------------------
//JAVA TO C# CONVERTER WARNING: 'final' parameters are not allowed in .NET:
//ORIGINAL LINE: private final String getFilterString(final VariantContext vc)
private string getFilterString(VariantContext vc)
{
if (vc.Filtered)
{
foreach (String filter in vc.Filters)
{
if (!mHeader.hasFilterLine(filter))
{
fieldIsMissingFromHeaderError(vc, filter, "FILTER");
}
}
return(ParsingUtils.join(";", ParsingUtils.sortList(vc.Filters)));
}
else if (vc.filtersWereApplied())
{
return(VCFConstants.PASSES_FILTERS_v4);
}
else
{
return(VCFConstants.UNFILTERED);
}
}
//JAVA TO C# CONVERTER WARNING: Method 'throws' clauses are not available in .NET:
//ORIGINAL LINE: private void buildFilter(VariantContext vc) throws IOException
private void buildFilter(VariantContext vc)
{
if (vc.Filtered)
{
encodeStringsByRef(vc.Filters);
}
else if (vc.filtersWereApplied())
{
encodeStringsByRef(Collections.singleton(VCFConstants.PASSES_FILTERS_v4));
}
else
{
encoder.encodeTypedMissing(BCF2Type.INT8);
}
}
