public FeatureVariantEffects(IInterval feature, VariantType vt, IInterval variant, bool isSv)
{
_isSv = isSv;
_completelyOverlaps = IntervalUtilities.Contains(variant.Start, variant.End, feature.Start, feature.End);
_overlaps = feature.Overlaps(variant);
_completelyWithin = variant.Start >= feature.Start && variant.End <= feature.End;
_lossOrDeletion = vt == VariantType.copy_number_loss || vt == VariantType.deletion || vt == VariantType.copy_number_loss;
_gainOrDuplication = vt == VariantType.copy_number_gain || vt == VariantType.duplication || vt == VariantType.tandem_duplication || vt == VariantType.copy_number_gain;
_isInsertionDeletion = vt == VariantType.indel;
_isInsertion = vt == VariantType.insertion;
}
public void Contains_Theory(int start1, int end1, int start2, int end2, bool expectedResult)
{
var observedResult = IntervalUtilities.Contains(start1, end1, start2, end2);
Assert.Equal(expectedResult, observedResult);
}