This software has the following features:
- Multiple solvers
- Multiple output formats
- Simple JSON configuration
- Text based model specification
Here is a sample configuration: 👍
{
"duration" : 3650,
"runs" : 1,
"samples" : 3650,
"solver" : "R",
"output" : {
"headers" : true
},
"tau-leaping" : {
"epsilon" : 0.01
},
"r-leaping" : {}
}Here is a sample model file:
; simplemodel
(import (rnrs) (emodl cmslib))
(start-model "seir.emodl")
(species S 990)
(species E)
(species I 10)
(species R)
(observe susceptible S)
(observe exposed E)
(observe infectious I)
(observe recovered R)
(param Ki 0.0005)
(param Kl 0.2)
(param Kr (/ 1 7))
(param Kw (/ 1 135))
(reaction exposure (S I) (E I) (* Ki S I))
(reaction infection (E) (I) (* Kl E))
(reaction recovery (I) (R) (* Kr I))
(reaction waning (R) (S) (* Kw R))
(end-model)You can find additional documentation here:
https://institutefordiseasemodeling.github.io/Documentation/cms/index.html