/// <summary>
/// Load the values for the sequence <see cref="DicomTags.RequestAttributesSequence"/>
/// into a response message for a specific series.
/// </summary>
/// <param name="read">The connection to use to read the values.</param>
/// <param name="response">The message to add the values into.</param>
/// <param name="row">The <see cref="Series"/> entity to load the related <see cref="RequestAttributes"/> entity for.</param>
private static void LoadRequestAttributes(IPersistenceContext read, DicomMessageBase response, Series row)
{
var select = read.GetBroker<IRequestAttributesEntityBroker>();
var criteria = new RequestAttributesSelectCriteria();
criteria.SeriesKey.EqualTo(row.GetKey());
IList<RequestAttributes> list = select.Find(criteria);
if (list.Count == 0)
{
response.DataSet[DicomTags.RequestAttributesSequence].SetNullValue();
return;
}
foreach (RequestAttributes request in list)
{
var item = new DicomSequenceItem();
item[DicomTags.ScheduledProcedureStepId].SetStringValue(request.ScheduledProcedureStepId);
item[DicomTags.RequestedProcedureId].SetStringValue(request.RequestedProcedureId);
response.DataSet[DicomTags.RequestAttributesSequence].AddSequenceItem(item);
}
}
private void OnSeriesDeleted(Series seriesUid)
{
EnsureWebDeleteExtensionsLoaded();
foreach (IWebDeleteProcessorExtension extension in _extensions)
{
try
{
WebDeleteProcessorContext context = new WebDeleteProcessorContext(this, Level, StorageLocation, _reason, _userId, _userName);
extension.OnSeriesDeleted(context, seriesUid);
}
catch (Exception ex)
{
Platform.Log(LogLevel.Error, ex, "Error occurred in the extension but was ignored");
}
}
}
public DeleteSeriesFromDBCommand(StudyStorageLocation location, Series series)
: base(String.Format("Delete Series In DB {0}", series.SeriesInstanceUid))
{
_location = location;
_series = series;
}
/// <summary>
/// Populate the data from a <see cref="Series"/> entity into a DICOM C-FIND-RSP message.
/// </summary>
/// <param name="read">The connection to use to read the values.</param>
/// <param name="request"></param>
/// <param name="response"></param>
/// <param name="tagList"></param>
/// <param name="row">The <see cref="Series"/> table to populate the row from.</param>
private void PopulateSeries(IPersistenceContext read, DicomMessageBase request, DicomMessageBase response, IEnumerable<DicomTag> tagList,
Series row)
{
DicomAttributeCollection dataSet = response.DataSet;
Study theStudy = Study.Load(read, row.StudyKey);
StudyStorage storage = StudyStorage.Load(read, theStudy.ServerPartitionKey, theStudy.StudyInstanceUid);
dataSet[DicomTags.RetrieveAeTitle].SetStringValue(Partition.AeTitle);
dataSet[DicomTags.InstanceAvailability].SetStringValue(storage.StudyStatusEnum == StudyStatusEnum.Nearline
? "NEARLINE"
: "ONLINE");
var characterSet = GetPreferredCharacterSet();
if (!string.IsNullOrEmpty(characterSet))
{
dataSet[DicomTags.SpecificCharacterSet].SetStringValue(characterSet);
dataSet.SpecificCharacterSet = characterSet;
}
else if (false == String.IsNullOrEmpty(theStudy.SpecificCharacterSet))
{
dataSet[DicomTags.SpecificCharacterSet].SetStringValue(theStudy.SpecificCharacterSet);
dataSet.SpecificCharacterSet = theStudy.SpecificCharacterSet; // this will ensure the data is encoded using the specified character set
}
foreach (DicomTag tag in tagList)
{
try
{
switch (tag.TagValue)
{
case DicomTags.PatientId:
dataSet[DicomTags.PatientId].SetStringValue(request.DataSet[DicomTags.PatientId].ToString());
break;
case DicomTags.StudyInstanceUid:
dataSet[DicomTags.StudyInstanceUid].SetStringValue(
request.DataSet[DicomTags.StudyInstanceUid].ToString());
break;
case DicomTags.SeriesInstanceUid:
dataSet[DicomTags.SeriesInstanceUid].SetStringValue(row.SeriesInstanceUid);
break;
case DicomTags.Modality:
dataSet[DicomTags.Modality].SetStringValue(row.Modality);
break;
case DicomTags.SeriesNumber:
dataSet[DicomTags.SeriesNumber].SetStringValue(row.SeriesNumber);
break;
case DicomTags.SeriesDescription:
dataSet[DicomTags.SeriesDescription].SetStringValue(row.SeriesDescription);
break;
case DicomTags.PerformedProcedureStepStartDate:
dataSet[DicomTags.PerformedProcedureStepStartDate].SetStringValue(
row.PerformedProcedureStepStartDate);
break;
case DicomTags.PerformedProcedureStepStartTime:
dataSet[DicomTags.PerformedProcedureStepStartTime].SetStringValue(
row.PerformedProcedureStepStartTime);
break;
case DicomTags.NumberOfSeriesRelatedInstances:
dataSet[DicomTags.NumberOfSeriesRelatedInstances].AppendInt32(row.NumberOfSeriesRelatedInstances);
break;
case DicomTags.RequestAttributesSequence:
LoadRequestAttributes(read, response, row);
break;
case DicomTags.QueryRetrieveLevel:
dataSet[DicomTags.QueryRetrieveLevel].SetStringValue("SERIES");
break;
// Meta tags that should have not been in the RQ, but we've already set
case DicomTags.RetrieveAeTitle:
case DicomTags.InstanceAvailability:
case DicomTags.SpecificCharacterSet:
break;
default:
if (!tag.IsPrivate)
dataSet[tag].SetNullValue();
foreach (var q in _queryExtensions)
q.PopulateSeries(response, tag, row);
break;
}
}
catch (Exception e)
{
Platform.Log(LogLevel.Warn, e, "Unexpected error setting tag {0} in C-FIND-RSP",
dataSet[tag].Tag.ToString());
if (!tag.IsPrivate)
dataSet[tag].SetNullValue();
}
}
}
static public Series Insert(IUpdateContext update, Series entity)
{
var broker = update.GetBroker<ISeriesEntityBroker>();
var updateColumns = new SeriesUpdateColumns();
updateColumns.ServerPartitionKey = entity.ServerPartitionKey;
updateColumns.StudyKey = entity.StudyKey;
updateColumns.SeriesInstanceUid = entity.SeriesInstanceUid;
updateColumns.Modality = entity.Modality;
updateColumns.NumberOfSeriesRelatedInstances = entity.NumberOfSeriesRelatedInstances;
updateColumns.PerformedProcedureStepStartDate = entity.PerformedProcedureStepStartDate;
updateColumns.PerformedProcedureStepStartTime = entity.PerformedProcedureStepStartTime;
updateColumns.SourceApplicationEntityTitle = entity.SourceApplicationEntityTitle;
updateColumns.SeriesNumber = entity.SeriesNumber;
updateColumns.SeriesDescription = entity.SeriesDescription;
Series newEntity = broker.Insert(updateColumns);
return newEntity;
}
static public Series Insert(Series entity)
{
using (var update = PersistentStoreRegistry.GetDefaultStore().OpenUpdateContext(UpdateContextSyncMode.Flush))
{
Series newEntity = Insert(update, entity);
update.Commit();
return newEntity;
}
}
private void LoadSeriesDetails()
{
if (!String.IsNullOrEmpty(_serverae) && !String.IsNullOrEmpty(_studyInstanceUid) && !String.IsNullOrEmpty(_seriesInstanceUid))
{
StudyAdaptor studyAdaptor = new StudyAdaptor();
SeriesSearchAdaptor seriesAdaptor = new SeriesSearchAdaptor();
ServerPartitionDataAdapter adaptor = new ServerPartitionDataAdapter();
ServerPartitionSelectCriteria criteria = new ServerPartitionSelectCriteria();
criteria.AeTitle.EqualTo(_serverae);
Model.ServerPartition partition = adaptor.GetFirst(criteria);
if (partition != null)
{
Partition = partition;
StudySelectCriteria studyCriteria = new StudySelectCriteria();
studyCriteria.StudyInstanceUid.EqualTo(_studyInstanceUid);
studyCriteria.ServerPartitionKey.EqualTo(Partition.GetKey());
Model.Study study = studyAdaptor.GetFirst(studyCriteria);
if (study != null)
{
// there should be only one study
_study = study;
SeriesSelectCriteria seriesCriteria = new SeriesSelectCriteria();
seriesCriteria.SeriesInstanceUid.EqualTo(_seriesInstanceUid);
Series series = seriesAdaptor.GetFirst(seriesCriteria);
if (series != null)
{
_series = series;
}
}
}
}
if (_study!=null && _series != null)
{
SeriesDetailsPanel1.Study = _study;
SeriesDetailsPanel1.Series = _series;
}
DataBind();
}
private void ValidateSeries(StudyStorageLocation location, Series series, SeriesXml seriesXml)
{
Study study = location.Study;
ServerPartition partition = location.ServerPartition;
if (seriesXml == null)
{
throw new StudyIntegrityValidationFailure(ValidationErrors.InconsistentObjectCount,
new ValidationStudyInfo(study, partition),
String.Format("Series {0} exists in the datbase but not in the study xml",
series.SeriesInstanceUid));
}
if (series.NumberOfSeriesRelatedInstances != seriesXml.NumberOfSeriesRelatedInstances)
{
throw new StudyIntegrityValidationFailure(ValidationErrors.InconsistentObjectCount,
new ValidationStudyInfo(study, partition),
String.Format("Number of Series Related Instance in the database and xml for series {0} do not match: {1} vs {2}",
series.SeriesInstanceUid, series.NumberOfSeriesRelatedInstances, seriesXml.NumberOfSeriesRelatedInstances));
}
long seriesImageCount = DirectoryUtility.Count(location.GetSeriesPath(series.SeriesInstanceUid), "*" + ServerPlatform.DicomFileExtension, true, null);
if (seriesXml.NumberOfSeriesRelatedInstances != seriesImageCount)
{
throw new StudyIntegrityValidationFailure(ValidationErrors.InconsistentObjectCount,
new ValidationStudyInfo(study, partition),
String.Format("Number of Series Related Instance in the xml for series {0} does not match number of images in the series folder: {1} vs {2}",
series.SeriesInstanceUid, seriesXml.NumberOfSeriesRelatedInstances, seriesImageCount));
}
}
private void Initialize()
{
_study = Study.Find(ServerExecutionContext.Current.ReadContext,_studyLocation.StudyInstanceUid, _partition);
_curPatient = _study.LoadPatient(ServerExecutionContext.Current.ReadContext);
_oldPatientInfo = new PatientInfo
{
PatientsName = _curPatient.PatientsName,
PatientId = _curPatient.PatientId,
IssuerOfPatientId = _curPatient.IssuerOfPatientId
};
_seriesInstanceUid = _file.DataSet[DicomTags.SeriesInstanceUid].ToString();
var broker = ServerExecutionContext.Current.ReadContext.GetBroker<ISeriesEntityBroker>();
var select = new SeriesSelectCriteria();
select.SeriesInstanceUid.EqualTo(_seriesInstanceUid);
select.ServerPartitionKey.EqualTo(_partition.Key);
_curSeries = broker.FindOne(select);
_newPatientInfo = new PatientInfo(_oldPatientInfo);
_file.DataSet.LoadDicomFields(_newPatientInfo);
_newPatient = FindPatient(_newPatientInfo, ServerExecutionContext.Current.ReadContext);
_patientInfoIsNotChanged = _newPatientInfo.Equals(_oldPatientInfo);
}
public void OnSeriesDeleted(WebDeleteProcessorContext context, Series _series)
{
}
public void OnSeriesDeleting(WebDeleteProcessorContext context, Series series)
{
_studyInfo = StudyInformation.CreateFrom(context.StorageLocation.Study);
}
