private AuditLogEntry ReadEntries(XmlReader reader) { if (!reader.IsStartElement(AuditLogEntry.XML_ROOT)) { return(AuditLogEntry.ROOT); } return(reader.DeserializeElement <AuditLogEntry>() .ChangeParent(ReadEntries(reader))); }
public void ReadXml(XmlReader reader) { LogIndex = Interlocked.Increment(ref _logIndexCounter); FormatVersion = new DocumentFormat(reader.GetDoubleAttribute(ATTR.format_version)); var time = DateTime.Parse(reader.GetAttribute(ATTR.time_stamp), CultureInfo.InvariantCulture); TimeStamp = DateTime.SpecifyKind(time, DateTimeKind.Utc).ToLocalTime(); User = reader.GetAttribute(ATTR.user); InsertUndoRedoIntoAllInfo = reader.GetBoolAttribute(ATTR.insert_undo_redo); var countType = reader.GetAttribute(ATTR.count_type); if (countType == null) { CountEntryType = null; } else { CountEntryType = (MessageType)Enum.Parse(typeof(MessageType), countType); } reader.ReadStartElement(); Reason = reader.IsStartElement(EL.reason) ? reader.ReadElementString() : string.Empty; ExtraInfo = reader.IsStartElement(EL.extra_info) ? reader.ReadElementString().UnescapeNonPrintableChars() : string.Empty; UndoRedo = reader.DeserializeElement <LogMessage>(); Summary = reader.DeserializeElement <LogMessage>(); var list = new List <LogMessage>(); while (reader.IsStartElement(EL.message)) { list.Add(reader.DeserializeElement <LogMessage>()); } AllInfo = list; reader.ReadEndElement(); }
public void ReadXml(XmlReader reader) { reader.ReadStartElement(); var auditLogEntries = new List <AuditLogEntry>(); while (reader.IsStartElement(AuditLogEntry.XML_ROOT)) { var entry = reader.DeserializeElement <AuditLogEntry>(); auditLogEntries.Add(entry); } AuditLogEntries = ImmutableList.ValueOf(auditLogEntries); reader.ReadEndElement(); }
public override void ReadXml(XmlReader reader) { base.ReadXml(reader); AnnotationTargets = AnnotationTargetSet.Parse(reader.GetAttribute(Attr.targets)); // In older documents, it's possible for the "type" attribute value to be "-1". Type = TypeSafeEnum.ValidateOrDefault(reader.GetEnumAttribute(Attr.type, AnnotationType.text), AnnotationType.text); Lookup = reader.GetAttribute(Attr.lookup); var items = new List <string>(); if (reader.IsEmptyElement) { reader.Read(); } else { reader.Read(); while (true) { if (reader.IsStartElement(El.value)) { items.Add(reader.ReadElementString()); } else if (reader.IsStartElement(El.expression)) { Expression = reader.DeserializeElement <AnnotationExpression>(); } else { break; } } reader.ReadEndElement(); } _items = MakeReadOnly(items); }
public override void ReadXml(XmlReader reader) { // Read tag attributes base.ReadXml(reader); reader.ReadStartElement(); PeptideSettings = reader.DeserializeElement<PeptideSettings>(); TransitionSettings = reader.DeserializeElement<TransitionSettings>(); // 10.23.12 -- The order of <measured_results> and <data_settings> has been switched to enable parsing (in Panorama) // of all annotation definitions before reading any replicate annotations in <measured_results>. // We want Skyline to be able to read older documents where <measured_results> come before <data_settings> if (reader.IsStartElement(new XmlElementHelper<MeasuredResults>().ElementNames[0])) { MeasuredResults = reader.DeserializeElement<MeasuredResults>(); DataSettings = reader.DeserializeElement<DataSettings>() ?? DataSettings.DEFAULT; } else { DataSettings = reader.DeserializeElement<DataSettings>() ?? DataSettings.DEFAULT; MeasuredResults = reader.DeserializeElement<MeasuredResults>(); } DocumentRetentionTimes = reader.DeserializeElement<DocumentRetentionTimes>() ?? DocumentRetentionTimes.EMPTY; reader.ReadEndElement(); ValidateLoad(); }
public void ReadXml(XmlReader reader) { // Consume tag if (reader.IsEmptyElement) reader.Read(); else { reader.ReadStartElement(); // Read child elements. Enzyme = reader.DeserializeElement<Enzyme>(); DigestSettings = reader.DeserializeElement<DigestSettings>(); BackgroundProteome = reader.DeserializeElement<BackgroundProteome>(); Prediction = reader.DeserializeElement<PeptidePrediction>(); Filter = reader.DeserializeElement<PeptideFilter>(); Libraries = reader.DeserializeElement<PeptideLibraries>(); Modifications = reader.DeserializeElement<PeptideModifications>(); Integration = reader.DeserializeElement<PeptideIntegration>(); Quantification = reader.DeserializeElement<QuantificationSettings>(); reader.ReadEndElement(); } Quantification = Quantification ?? QuantificationSettings.DEFAULT; // Defer validation to the SrmSettings object }
public void ReadXml(XmlReader reader) { bool? useMeasuredRTs = reader.GetNullableBoolAttribute(ATTR.use_measured_rts); MeasuredRTWindow = reader.GetNullableDoubleAttribute(ATTR.measured_rt_window); bool? useLibraryDriftTimes = reader.GetNullableBoolAttribute(ATTR.use_spectral_library_drift_times); LibraryDriftTimesResolvingPower = reader.GetNullableDoubleAttribute(ATTR.spectral_library_drift_times_resolving_power); // Keep XML values, if written by v0.5 or later if (useMeasuredRTs.HasValue) UseMeasuredRTs = useMeasuredRTs.Value; // Use reasonable defaults for documents saved prior to v0.5 else { UseMeasuredRTs = true; if (!MeasuredRTWindow.HasValue) MeasuredRTWindow = DEFAULT_MEASURED_RT_WINDOW; } if (useLibraryDriftTimes.HasValue) UseLibraryDriftTimes = useLibraryDriftTimes.Value; else { UseLibraryDriftTimes = false; LibraryDriftTimesResolvingPower = null; } // Consume tag if (reader.IsEmptyElement) reader.Read(); else { reader.ReadStartElement(); // Read child elements RetentionTime = reader.DeserializeElement<RetentionTimeRegression>(); DriftTimePredictor = reader.DeserializeElement<DriftTimePredictor>(); reader.ReadEndElement(); } DoValidate(); }