GCModeller Virtual Cell System

• HOME: http://gcmodeller.org
• Online services: http://services.gcmodeller.org
• Github: https://github.com/smrucc/GCModeller
• SDK docs: http://docs.gcmodeller.org

Supported platform: Microsoft Windows, GNU Linux, MAC
Development: Microsoft VisualStudio 2015 | VisualBasic.NET
Runtime environment: VisualBasic App v1.0.40 & .NET Framework 4.6 (or mono 4.4)

GCModeller is an open source cloud computing platform for the geneticist and systems biology. You can easily build a local computing server cluster for GCModeller on the large amount biological data analysis.

The GCModeller platform is original writen in VisualBasic.NET language, a feature bioinformatics analysis environment that .NET language hybrids programming with R language was included, which its SDK is available at repository: https://github.com/SMRUCC/R.Bioinformatics Currently the R language hybrids programming environment just provides some bioconductor API for the analysis in GCModeller.

GCModeller is a set of utility tools working on the annotation of the whole cell system, this including the whole genome regulation annotation, transcriptome analysis toolkits, metabolism pathway analysis toolkits. And some common bioinformatics problem utils tools and common biological database I/O tools is also available in GCModeller for the .NET language programming.

GCModeller supports the SBML and BIOM data standards for exchanges the analysis and model data with other bioinformatics softwares.

SBML	BIOM

##Feature tools

• 1. NCBI localblast utility
• 2. MEME tools combine with Regprecise database
• 3. Circos plots utility
• 4. Protein structure analysis tools
• 5. KEGG database tools
• 6. Reactome/MetaCyc database tools
• 7. Venn diagram drawing tools
• 8. Cytoscape utility tools
• 9. Motif Parallel alignment tools for the protein interaction network and family annotation

The main virtual cell analysis engine is under development progress.

Visit our project home: http://gcmodeller.org

##For developers Here are some released library of the GCModeller is published on nuget, then you can install these library in VisualStudio from Package Manager Console:

Install Microsoft VisualBasic Runtime environment library for GCModeller: https://github.com/xieguigang/VisualBasic_AppFramework

PM> Install-Package VB_AppFramework

The GCModeller core base library was released: https://github.com/SMRUCC/GCModeller.Core

PM> Install-Package GCModeller.Core

The NCBI localblast analysis toolkit: https://github.com/SMRUCC/ncbi-localblast

PM> Install-Package NCBI_localblast

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