/// <summary>
/// Imports all Events of the SBML Model.
/// </summary>
protected override void Import(Model model)
{
_astHandler.NeedAbsolutePath = true;
CreateEGBandEGBB();
for (long i = 0; i < model.getNumEvents(); i++)
{
CreateEvent(model.getEvent(i));
}
_astHandler.NeedAbsolutePath = false;
AddToProject();
}
/// <summary>
/// Imports all Events of the SBML Model.
/// </summary>
protected override void Import(Model model)
{
_astHandler.NeedAbsolutePath = true;
CreateEGBandEGBB();
var numEvents = model.getNumEvents();
if (numEvents == 0)
{
CreateEmptyEvent();
}
else
{
for (var i = 0; i < numEvents; i++)
{
CreateEvent(model.getEvent(i));
}
}
_astHandler.NeedAbsolutePath = false;
AddToProject();
}
private static void printMath(Model m)
{
int n;
for (n = 0; n < m.getNumFunctionDefinitions(); ++n)
{
printFunctionDefinition(n + 1, m.getFunctionDefinition(n));
}
for (n = 0; n < m.getNumRules(); ++n)
{
printRuleMath(n + 1, m.getRule(n));
}
Console.WriteLine();
for (n = 0; n < m.getNumReactions(); ++n)
{
printReactionMath(n + 1, m.getReaction(n));
}
Console.WriteLine();
for (n = 0; n < m.getNumEvents(); ++n)
{
printEventMath(n + 1, m.getEvent(n));
}
}
public void test_Event_parent_create()
{
Model m = new Model(2,4);
Event e = m.createEvent();
ListOf lo = m.getListOfEvents();
assertTrue( lo == m.getEvent(0).getParentSBMLObject() );
assertTrue( lo == e.getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
public void test_Event_parent_add()
{
Event e = new Event(2,4);
Trigger t = new Trigger(2,4);
e.setTrigger(t);
e.createEventAssignment();
Model m = new Model(2,4);
m.addEvent(e);
e = null;
ListOf lo = m.getListOfEvents();
assertTrue( lo == m.getEvent(0).getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
public void test_Event_ancestor_create()
{
Model m = new Model(2,4);
Event e = m.createEvent();
ListOf lo = m.getListOfEvents();
assertTrue( e.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( e.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( e.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( e.getAncestorOfType(libsbml.SBML_PARAMETER) == null );
Event obj = m.getEvent(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
}
public void test_Event_ancestor_add()
{
Event e = new Event(2,4);
Model m = new Model(2,4);
Trigger t = new Trigger(2,4);
e.setTrigger(t);
e.createEventAssignment();
m.addEvent(e);
e = null;
ListOf lo = m.getListOfEvents();
Event obj = m.getEvent(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}
public void test_ReadSBML_metaid_Event()
{
SBase sb;
Event e;
string s = wrapSBML_L2v1("<listOfEvents>" +
" <event metaid='e'>" +
" <listOfEventAssignments metaid='loea'>" +
" <eventAssignment metaid='ea'/>" +
" </listOfEventAssignments>" +
" </event>" +
"</listOfEvents>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M != null );
e = M.getEvent(0);
sb = e;
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "e" == sb.getMetaId() ));
sb = e.getListOfEventAssignments();
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "loea" == sb.getMetaId() ));
sb = e.getEventAssignment(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "ea" == sb.getMetaId() ));
}
public void test_ReadSBML_metaid()
{
SBase sb;
string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" +
" <functionDefinition metaid='fd'/>" +
"</listOfFunctionDefinitions>" +
"<listOfUnitDefinitions>" +
" <unitDefinition metaid='ud'/>" +
"</listOfUnitDefinitions>" +
"<listOfCompartments>" +
" <compartment metaid='c'/>" +
"</listOfCompartments>" +
"<listOfSpecies>" +
" <species metaid='s'/>" +
"</listOfSpecies>" +
"<listOfParameters>" +
" <parameter metaid='p'/>" +
"</listOfParameters>" +
"<listOfRules>" +
" <rateRule metaid='rr'/>" +
"</listOfRules>" +
"<listOfReactions>" +
" <reaction metaid='rx'/>" +
"</listOfReactions>" +
"<listOfEvents>" +
" <event metaid='e'/>" +
"</listOfEvents>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M != null );
sb = M.getFunctionDefinition(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "fd" == sb.getMetaId() ));
sb = M.getUnitDefinition(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "ud" == sb.getMetaId() ));
sb = M.getCompartment(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "c" == sb.getMetaId() ));
sb = M.getSpecies(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "s" == sb.getMetaId() ));
sb = M.getParameter(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "p" == sb.getMetaId() ));
sb = M.getRule(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "rr" == sb.getMetaId() ));
sb = M.getReaction(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "rx" == sb.getMetaId() ));
sb = M.getEvent(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "e" == sb.getMetaId() ));
}
public void test_ReadSBML_Event_trigger()
{
Event e;
Trigger trigger;
string formula;
string s = wrapSBML_L2v1("<listOfEvents>" +
" <event>" +
" <trigger>" +
" <math>" +
" <apply>" +
" <leq/>" +
" <ci> P1 </ci>" +
" <ci> t </ci>" +
" </apply>" +
" </math>" +
" </trigger>" +
" </event>" +
"</listOfEvents>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M.getNumEvents() == 1 );
e = M.getEvent(0);
assertTrue( e != null );
assertEquals( false, e.isSetDelay() );
assertEquals( true, e.isSetTrigger() );
trigger = e.getTrigger();
formula = libsbml.formulaToString(trigger.getMath());
assertTrue( formula != null );
assertTrue(( "leq(P1, t)" == formula ));
}
public void test_ReadSBML_Event_delay()
{
Event e;
Delay delay;
string formula;
string s = wrapSBML_L2v1("<listOfEvents>" +
" <event> <delay> <math> <cn> 5 </cn> </math> </delay> </event>" +
"</listOfEvents>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M.getNumEvents() == 1 );
e = M.getEvent(0);
assertTrue( e != null );
assertEquals( true, e.isSetDelay() );
assertEquals( false, e.isSetTrigger() );
delay = e.getDelay();
formula = libsbml.formulaToString(delay.getMath());
assertTrue( formula != null );
assertTrue(( "5" == formula ));
}
public void test_ReadSBML_EventAssignment()
{
Event e;
EventAssignment ea;
ASTNode math;
string formula;
string s = wrapSBML_L2v1("<listOfEvents>" +
" <event>" +
" <listOfEventAssignments>" +
" <eventAssignment variable='k2'>" +
" <math> <cn> 0 </cn> </math>" +
" </eventAssignment>" +
" </listOfEventAssignments>" +
" </event>" +
"</listOfEvents>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M.getNumEvents() == 1 );
e = M.getEvent(0);
assertTrue( e != null );
assertTrue( e.getNumEventAssignments() == 1 );
ea = e.getEventAssignment(0);
assertTrue( ea != null );
assertEquals( true, ea.isSetVariable() );
assertTrue(( "k2" == ea.getVariable() ));
assertEquals( true, ea.isSetMath() );
math = ea.getMath();
formula = libsbml.formulaToString(math);
assertTrue( formula != null );
assertTrue(( "0" == formula ));
}
public void test_ReadSBML_Event()
{
Event e;
string s = wrapSBML_L2v2("<listOfEvents>" +
" <event id='e1' name='MyEvent' timeUnits='time'/>" +
"</listOfEvents>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M.getNumEvents() == 1 );
e = M.getEvent(0);
assertTrue( e != null );
assertEquals( true, e.isSetId() );
assertEquals( true, e.isSetName() );
assertEquals( true, e.isSetTimeUnits() );
assertEquals( false, e.isSetTrigger() );
assertEquals( false, e.isSetDelay() );
assertTrue(( "e1" == e.getId() ));
assertTrue(( "MyEvent" == e.getName() ));
assertTrue(( "time" == e.getTimeUnits() ));
}