public bool exptEquals(Results other)
{
if (this.FilePath != other.FilePath)
{
Console.Write("Results objects not equal: ");
Console.WriteLine("this.FilePath='" + this.FilePath + "'; other.FilePath='" + other.FilePath);
return false;
}
if (this.CurrentState.exptEquals(other.CurrentState) == false)
{
Console.Write("Results objects not equal: ");
Console.WriteLine("this.CurrentState != other.CurrentState");
return false;
}
try
{
for (int i = 0; i < this.StateSnapshots.Count; i++)
{
if (this.StateSnapshots[i].exptEquals(other.StateSnapshots[i]) == false)
{
Console.Write("Results objects not equal: ");
Console.WriteLine("this.StateSnapshots[" + i + "] != other.StateSnapshots[" + i + "]");
return false;
}
}
}
catch (Exception e)
{
Console.Write("Results objects not equal: ");
Console.Write("this.StateSnapshots.Count = " + this.StateSnapshots.Count);
Console.WriteLine("; other.StateSnapshots.Count = " + other.StateSnapshots.Count);
return false;
}
try
{
for (int i = 0; i < this.TimeSeries.Count; i++)
{
if (this.TimeSeries[i].exptEquals(other.TimeSeries[i]) == false)
{
Console.Write("Results objects not equal: ");
Console.WriteLine("this.TimeSeries[" + i + "] != other.TimeSeries[" + i + "]");
return false;
}
}
}
catch (Exception e)
{
// Array out of bounds; lists are unequal
Console.Write("Results objects not equal: ");
Console.Write("this.TimeSeries.Count = " + this.TimeSeries.Count);
Console.WriteLine("; other.TimeSeries.Count = " + other.TimeSeries.Count);
Console.WriteLine("\n" + e.InnerException);
Console.WriteLine(e.Message);
Console.WriteLine(e.Source);
Console.WriteLine(e.StackTrace);
return false;
}
return true;
}
public void TestSerializationEquality()
{
String filename = "../../UnitTests/expt1.serialized.xml";
MuCell.Model.Experiment experiment = new MuCell.Model.Experiment("experiment1");
Simulation simulation1 = new Simulation("simulation1");
Results results = new Results();
MuCell.Model.SBML.Model model = new MuCell.Model.SBML.Model();
CellDefinition cellDef1 = new CellDefinition("cellDef1");
cellDef1.addSBMLModel(model);
for (int i = 0; i < 5; i++)
{
StateSnapshot snapshot = new StateSnapshot();
for (int j = 0; j < 10; j++)
{
CellInstance cell = new CellInstance(cellDef1);
cell.GroupID = j;
cell.CellInstanceSpatialContext.Position = new Vector3(1*j, 1+i, 2+j);
cell.CellInstanceSpatialContext.Velocity = new Vector3(4*i, 5+j, 3+i);
cell.CellInstanceSpatialContext.Volume = new Vector3(10+j, 14*i, 15*i);
cell.CellInstanceSpatialContext.Orientation = new Vector3(2+i, 3*j, 4*j);
snapshot.Cells.Add(cell);
}
MuCell.Model.Environment environment = new MuCell.Model.Environment(new Vector3(10 * i, 14 * i, 15 * i));
SerializableDictionary<int, MuCell.Model.SBML.Group> dict = new SerializableDictionary<int, MuCell.Model.SBML.Group>();
// create new groups x3
MuCell.Model.SBML.Group group1 = new MuCell.Model.SBML.Group(1);
group1.Col = System.Drawing.Color.Beige;
MuCell.Model.SBML.Group group2 = new MuCell.Model.SBML.Group(2);
group2.Col = System.Drawing.Color.Brown;
MuCell.Model.SBML.Group group3 = new MuCell.Model.SBML.Group(3);
group3.Col = System.Drawing.Color.Green;
dict.Add(1, group1); dict.Add(2, group2); dict.Add(3, group3);
environment.Groups = dict;
//SerializableDictionary<int, MuCell.Model.NutrientField> nutDict = new SerializableDictionary<int, MuCell.Model.NutrientField>();
//// create new nutrients x2
//MuCell.Model.NutrientField nut1 = new MuCell.Model.NutrientField(1);
//MuCell.Model.NutrientField nut2 = new MuCell.Model.NutrientField(2);
//nut2.Col = System.Drawing.Color.Fuchsia;
//nutDict.Add(1,nut1); nutDict.Add(2,nut2);
//environment.Nutrients = nutDict;
snapshot.SimulationEnvironment = environment;
results.StateSnapshots.Add(snapshot);
}
results.CurrentState = results.StateSnapshots[4];
for (int i = 0; i < 3; i++)
{
TimeSeries timeSeries = new TimeSeries("Function" + i, 1.2 * i);
for (int j = 0; j < 20; j++)
{
timeSeries.Series.Add(0.43+i*j+0.031*j);
}
results.TimeSeries.Add(timeSeries);
}
results.FilePath = "some-file-path";
simulation1.SimulationResults = results;
SimulationParameters simulationParams1 = new SimulationParameters();
simulationParams1.TimeSeries = results.TimeSeries;
simulationParams1.InitialState = results.StateSnapshots[0];
// add to simulation
simulation1.Parameters = simulationParams1;
// expt.addSimulation
experiment.addSimulation(simulation1);
XmlSerializer s = new XmlSerializer(typeof(MuCell.Model.Experiment));
TextWriter w = new StreamWriter(filename);
s.Serialize(w, experiment);
w.Close();
TextReader tr = new StreamReader(filename);
Experiment deserializedExpt = (Experiment)s.Deserialize(tr);
tr.Close();
Assert.IsTrue(experiment.exptEquals(deserializedExpt));
}
