protected void OnGraphFormGotFocus(Manager sender, GraphForm graphForm)
{
if (GraphFormGotFocus != null)
GraphFormGotFocus(sender, graphForm);
}
void Manager_GraphFormGotFocus (Manager sender, GraphForm graphForm)
{
if (graphForm.FocusedPane != null && graphForm.FocusedItem.Tag is MassSpectrum)
{
AnnotationButton.Enabled = true;
DataProcessingButton.Enabled = true;
}
else
{
AnnotationButton.Enabled = false;
DataProcessingButton.Enabled = false;
}
}
public seemsForm()
{
InitializeComponent();
ToolStripManager.RenderMode = ToolStripManagerRenderMode.Professional;
this.Load += seems_Load;
this.Resize += seems_Resize;
this.LocationChanged += seems_LocationChanged;
seemsRegistryKey = Registry.CurrentUser.OpenSubKey( seemsRegistryLocation );
if( seemsRegistryKey != null )
seemsRegistryKey.Close();
recentFilesMenu = new MruStripMenu( recentFilesFileMenuItem, new MruStripMenu.ClickedHandler( recentFilesFileMenuItem_Click ), seemsRegistryLocation + "\\Recent File List", true );
browseToFileDialog = new OpenDataSourceDialog();
browseToFileDialog.InitialDirectory = "C:\\";
DockPanelManager.RenderMode = DockPanelRenderMode.VisualStyles;
manager = new Manager(dockPanel);
Manager.GraphFormGotFocus += new GraphFormGotFocusHandler(Manager_GraphFormGotFocus);
Manager.LoadDataSourceProgress += new LoadDataSourceProgressEventHandler(Manager_LoadDataSourceProgress);
}
public void Manager_LoadDataSourceProgress (Manager sender, string status, int percentage, CancelEventArgs e)
{
if (toolStrip1.InvokeRequired)
{
LoadDataSourceProgressEventHandler d = new LoadDataSourceProgressEventHandler(Manager_LoadDataSourceProgress);
Invoke(d, new object[] { sender, status, percentage, e });
}
else
{
if (toolStrip1.IsDisposed)
{
e.Cancel = true;
return;
}
if (status.Length > 0)
{
toolStripStatusLabel1.Text = status;
toolStripStatusLabel1.Visible = true;
}
else
toolStripStatusLabel1.Visible = false;
switch (percentage)
{
case 100:
toolStripProgressBar1.Visible = false;
break;
default:
toolStripProgressBar1.Visible = true;
toolStripProgressBar1.Minimum = 0;
toolStripProgressBar1.Maximum = 100;
toolStripProgressBar1.Value = percentage;
break;
}
toolStrip1.Refresh();
}
}
public seems( string[] args )
{
InitializeComponent();
this.Load += seems_Load;
this.Resize += seems_Resize;
this.LocationChanged += seems_LocationChanged;
seemsRegistryKey = Registry.CurrentUser.OpenSubKey( seemsRegistryLocation );
if( seemsRegistryKey != null )
seemsRegistryKey.Close();
recentFilesMenu = new MruStripMenu( recentFilesFileMenuItem, new MruStripMenu.ClickedHandler( recentFilesFileMenuItem_Click ), seemsRegistryLocation + "\\Recent File List", true );
dockPanel.DocumentStyle = DigitalRune.Windows.Docking.DocumentStyle.DockingMdi;
browseToFileDialog = new OpenFileDialog();
browseToFileDialog.Filter =
"Any spectra format (*.mzML;*.mzData;*.mzXML;*.xml;*.raw;*.wiff;*.mgf;*.dta;fid;*.baf;*.yep)|*.mzML;*.mzData;*.mzXML;*.xml;*.raw;*.wiff;*.mgf;*.dta;fid;*.baf;*.yep|" +
"mzML (*.mzML;*.xml)|*.mzML;*.xml|" +
"mzData (*.mzData;*.xml)|*.mzData;*.xml|" +
"mzXML (*.mzXML;*.xml)|*.mzXML;*.xml|" +
"RAW (*.RAW)|*.raw|" +
"WIFF (*.WIFF)|*.wiff|" +
"Bruker (fid;*.baf;*.yep)|fid;*.baf;*.yep|" +
"MGF (*.mgf)|*.mgf|" +
"DTA (*.dta)|*.dta";
browseToFileDialog.FilterIndex = 0;
browseToFileDialog.InitialDirectory = "C:\\";
manager = new Manager(this);
if( args.Length > 0 )
{
this.BringToFront();
this.Focus();
this.Activate();
this.Show();
Application.DoEvents();
try
{
openFile( args[0] );
if( args.Length > 1 )
{
try
{
//browserForm.ElementNumberComboBox.SelectedIndex = Convert.ToInt32( args[1] );
} catch
{
}
}
} catch( Exception ex )
{
string message = ex.Message;
if( ex.InnerException != null )
message += "\n\nAdditional information: " + ex.InnerException.Message;
MessageBox.Show( message,
"Error recovering from crash",
MessageBoxButtons.OK, MessageBoxIcon.Error, MessageBoxDefaultButton.Button1,
0, false );
}
}
}
public IDPickerForm (IList<string> args)
{
InitializeComponent();
toolStripStatusLabel.Text = "Initializing...";
Thread.CurrentThread.Priority = ThreadPriority.AboveNormal;
this.args = args;
defaultDataFilter = new DataFilter();
manager = new Manager(dockPanel)
{
ShowChromatogramListForNewSources = false,
ShowSpectrumListForNewSources = false,
OpenFileUsesCurrentGraphForm = true,
};
progressMonitor = new ProgressMonitor();
progressMonitor.ProgressUpdate += progressMonitor_ProgressUpdate;
if (Program.IsHeadless)
Load += IDPickerForm_Load;
else
Shown += IDPickerForm_Load;
basicFilterControl = new BasicFilterControl();
basicFilterControl.BasicFilterChanged += basicFilterControl_BasicFilterChanged;
basicFilterControl.ApplyFilterChanges += basicFilterControl_ApplyFilterChanges;
basicFilterControl.ShowQonverterSettings += ShowQonverterSettings;
dataFilterPopup = new Popup(basicFilterControl) { FocusOnOpen = true };
dataFilterPopup.Closed += dataFilterPopup_Closed;
breadCrumbControl = new BreadCrumbControl() { Dock = DockStyle.Fill };
breadCrumbControl.BreadCrumbClicked += breadCrumbControl_BreadCrumbClicked;
breadCrumbPanel.Controls.Add(breadCrumbControl);
fragmentationStatisticsForm = new FragmentationStatisticsForm(this);
fragmentationStatisticsForm.Show(dockPanel, DockState.DockBottomAutoHide);
fragmentationStatisticsForm.AutoHidePortion = 0.5;
peakStatisticsForm = new PeakStatisticsForm(this);
peakStatisticsForm.Show(dockPanel, DockState.DockBottomAutoHide);
peakStatisticsForm.AutoHidePortion = 0.5;
distributionStatisticsForm = new DistributionStatisticsForm(this);
distributionStatisticsForm.Show(dockPanel, DockState.DockBottomAutoHide);
distributionStatisticsForm.AutoHidePortion = 0.5;
reassignPSMsForm = new RescuePSMsForm(this);
reassignPSMsForm.Show(dockPanel, DockState.DockBottomAutoHide);
reassignPSMsForm.AutoHidePortion = 0.5;
ptmAttestationForm = new PTMAttestationForm(this);
ptmAttestationForm.Show(dockPanel, DockState.DockBottomAutoHide);
ptmAttestationForm.AutoHidePortion = 0.5;
spectrumTableForm = new SpectrumTableForm();
spectrumTableForm.Show(dockPanel, DockState.DockLeft);
spectrumTableForm.AutoHidePortion = 0.5;
proteinTableForm = new ProteinTableForm();
proteinTableForm.Show(dockPanel, DockState.DockTop);
proteinTableForm.AutoHidePortion = 0.5;
peptideTableForm = new PeptideTableForm();
peptideTableForm.Show(dockPanel, DockState.DockTop);
peptideTableForm.AutoHidePortion = 0.5;
proteinTableForm.Activate();
modificationTableForm = new ModificationTableForm();
modificationTableForm.Show(dockPanel, DockState.Document);
modificationTableForm.AutoHidePortion = 0.5;
analysisTableForm = new AnalysisTableForm();
analysisTableForm.Show(dockPanel, DockState.Document);
analysisTableForm.AutoHidePortion = 0.5;
filterHistoryForm = new FilterHistoryForm();
filterHistoryForm.Show(dockPanel, DockState.Document);
filterHistoryForm.AutoHidePortion = 0.5;
spectrumTableForm.SpectrumViewFilter += handleViewFilter;
spectrumTableForm.SpectrumViewVisualize += spectrumTableForm_SpectrumViewVisualize;
spectrumTableForm.FinishedSetData += handleFinishedSetData;
spectrumTableForm.StartingSetData += handleStartingSetData;
proteinTableForm.ProteinViewFilter += handleViewFilter;
proteinTableForm.ProteinViewVisualize += proteinTableForm_ProteinViewVisualize;
proteinTableForm.FinishedSetData += handleFinishedSetData;
proteinTableForm.StartingSetData += handleStartingSetData;
peptideTableForm.PeptideViewFilter += handleViewFilter;
peptideTableForm.FinishedSetData += handleFinishedSetData;
peptideTableForm.StartingSetData += handleStartingSetData;
modificationTableForm.ModificationViewFilter += handleViewFilter;
modificationTableForm.FinishedSetData += handleFinishedSetData;
modificationTableForm.StartingSetData += handleStartingSetData;
analysisTableForm.AnalysisViewFilter += handleViewFilter;
analysisTableForm.FinishedSetData += handleFinishedSetData;
analysisTableForm.StartingSetData += handleStartingSetData;
filterHistoryForm.LoadPersistentDataFilter += handleLoadPersistentDataFilter;
//filterHistoryForm.FinishedSetData += handleFinishedSetData;
//filterHistoryForm.StartingSetData += handleStartingSetData;
// hide DockPanel before initializing layout manager
dockPanel.Visible = false;
dockPanel.ShowDocumentIcon = true;
persistentForms = new IPersistentForm[]
{
proteinTableForm,
peptideTableForm,
spectrumTableForm,
analysisTableForm,
filterHistoryForm
};
_layoutManager = new LayoutManager(this, dockPanel, persistentForms);
// load last or default location and size
_layoutManager.LoadMainFormSettings();
// certain features are only enabled for development builds
if (Application.ExecutablePath.Contains("build-nt-x86"))
{
// provide SQL logging for development builds
logForm = new LogForm();
logForm.AutoHidePortion = 0.25;
Console.SetOut(logForm.LogWriter);
developerToolStripMenuItem.ForeColor = SystemColors.MenuBar;
}
else
{
Console.SetOut(TextWriter.Null);
developerToolStripMenuItem.Visible = false;
}
/*spyEventLogForm = new SpyEventLogForm();
spyEventLogForm.AddEventSpy(new EventSpy("proteinTableForm", proteinTableForm));
spyEventLogForm.AddEventSpy(new EventSpy("peptideTableForm", peptideTableForm));
spyEventLogForm.AddEventSpy(new EventSpy("spectrumTableForm", spectrumTableForm));
spyEventLogForm.AddEventSpy(new EventSpy("modificationTableForm", modificationTableForm));
spyEventLogForm.Show(dockPanel, DockState.DockBottomAutoHide);*/
}