public List <double> FindAllBaseRatios()
{
List <double> ratios = new List <double> ();
if (!AppSettings.Processing.USE_THREADS.Item)
{
foreach (KeyValuePair <string, Scaffold> scaffpair in Scaffolds)
{
List <double> scafRats = scaffpair.Value.GetFragmentBaseRatio(400);
ratios.AddRange(scafRats);
}
return(ratios);
}
else
{
List <List <double> > dataPool = MainThreader.RunDividedList <Scaffold, List <double> >
(FindSubGroupBaseRatio, ShuffledScaffolds);
foreach (List <double> dl in dataPool)
{
ratios.AddRange(dl);
}
return(ratios);
}
}
public void SendReads(List <SeqScaffPair> sql)
{
if (!AppSettings.Processing.USE_THREADS.Item)
{
SendReadScaffList(sql);
}
else
{
MainThreader.RunDividedList <SeqScaffPair> (SendReadScaffList, sql);
}
}
public void SendVars(List <VarScaffPair> vpr)
{
if (!AppSettings.Processing.USE_THREADS.Item)
{
SendVarsScaffList(vpr);
}
else
{
MainThreader.RunDividedList <VarScaffPair> (SendVarsScaffList, vpr);
}
}
public Dictionary <string, List <List <double> > > GetAllSingleSpatialDepthCoverages()
{
if (!AppSettings.Processing.USE_THREADS.Item)
{
return(GetAllSingleSpatDepthCovScafffList(ShuffledScaffolds));
}
else
{
List <Dictionary <string, List <List <double> > > > thList = MainThreader.RunDividedList <Scaffold, Dictionary <string, List <List <double> > > >
(GetAllSingleSpatDepthCovScafffList, ShuffledScaffolds);
return(MainData.TypeDict.MergeDownDicts2D <double> (thList));
}
}
public Dictionary <string, List <double> > GetAllElementLengths()
{
if (!AppSettings.Processing.USE_THREADS.Item)
{
return(GetAllEleLenScaffList(new List <Scaffold> (Scaffolds.Values)));
}
else
{
List <Dictionary <string, List <double> > > thList = MainThreader.RunDividedList <Scaffold, Dictionary <string, List <double> > >
(GetAllEleLenScaffList, ShuffledScaffolds);
return(MainData.TypeDict.MergeDownDicts <double> (thList));
}
}
public Dictionary <string, double> RSPExprValue(string item)
{
SingleSeqForRSP = item;
if (!AppSettings.Processing.USE_THREADS.Item)
{
return(RSPExprValueScaffList(ShuffledScaffolds));
}
else
{
List <Dictionary <string, double> > thList = MainThreader.RunDividedList <Scaffold, Dictionary <string, double> >
(RSPExprValueScaffList, ShuffledScaffolds);
return(MainData.TypeDict.MergeDownDictsSingular <double> (thList));
}
}
public Dictionary <string, List <double> > RSPOUTMethylCoverageDepthDivision(string item)
{
SingleSeqForRSP = item;
if (!AppSettings.Processing.USE_THREADS.Item)
{
return(RSPOUTMethylCovDepthDivScafffList(ShuffledScaffolds));
}
else
{
List <Dictionary <string, List <double> > > thList = MainThreader.RunDividedList <Scaffold, Dictionary <string, List <double> > >
(RSPOUTMethylCovDepthDivScafffList, ShuffledScaffolds);
return(MainData.TypeDict.MergeDownDictsSingular <List <double> >(thList));
}
}