Exemple #1
0
        private void updateSpeciesDependentParameter(Model.CompoundProcess process, CompoundProcess batchCompoundProcess)
        {
            if (string.IsNullOrEmpty(batchCompoundProcess.Species))
            {
                return;
            }

            var species = _speciesRepository.FindById(batchCompoundProcess.Species);

            _compoundProcessTask.SetSpeciesForProcess(process, species);
        }
Exemple #2
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 private void updateProcessParameters(Model.CompoundProcess compoundProcess, CompoundProcess batchCompoundProcess)
 {
     foreach (var parameterValue in batchCompoundProcess.ParameterValues)
     {
         var parameter = compoundProcess.Parameter(parameterValue.Key);
         if (parameter == null)
         {
             _batchLogger.AddWarning($"Parameter '{parameterValue.Key}' not found in process '{compoundProcess.InternalName}'");
             continue;
         }
         parameter.Value = parameterValue.Value;
         _batchLogger.AddParameterValueToDebug(parameter);
     }
 }
Exemple #3
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        private ProcessSelectionGroup selectionGroup <TPartialProcess>(ProcessSelectionGroup processSelectionGroup, Model.CompoundProcess process, params SystemicProcessType[] systemicProcessTypes) where TPartialProcess : PartialProcess
        {
            if (process.IsAnImplementationOf <TPartialProcess>())
            {
                return(processSelectionGroup);
            }

            var systemicProcess = process as SystemicProcess;

            if (systemicProcess == null)
            {
                return(null);
            }

            if (systemicProcess.SystemicProcessType.IsOneOf(systemicProcessTypes))
            {
                return(processSelectionGroup);
            }

            return(null);
        }
Exemple #4
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 private ProcessSelectionGroup selectionGroupFor(CompoundProcessesSelection compoundProcessesSelection, Model.CompoundProcess process)
 {
     return(selectionGroup <EnzymaticProcess>(compoundProcessesSelection.MetabolizationSelection, process, SystemicProcessTypes.Hepatic) ??
            selectionGroup <TransportPartialProcess>(compoundProcessesSelection.TransportAndExcretionSelection, process, SystemicProcessTypes.GFR, SystemicProcessTypes.Biliary, SystemicProcessTypes.Renal) ??
            selectionGroup <SpecificBindingPartialProcess>(compoundProcessesSelection.SpecificBindingSelection, process));
 }
Exemple #5
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        private async Task addProcessToProcessSelection(CompoundProcessesSelection compoundProcessesSelection, CompoundProcessSelection snapshotCompoundProcessSelection, Model.CompoundProcess process, SnapshotContext snapshotContext)
        {
            var processSelectionGroup = selectionGroupFor(compoundProcessesSelection, process);
            var processContext        = new CompoundProcessSnapshotContext(process, snapshotContext);
            var processSelection      = await _processMappingMapper.MapToModel(snapshotCompoundProcessSelection, processContext);

            processSelectionGroup.AddProcessSelection(processSelection);
        }
        private async Task addProcessToProcessSelection(CompoundProcessesSelection compoundProcessesSelection, CompoundProcessSelection compoundProcessSelection, Model.CompoundProcess process)
        {
            var processSelectionGroup = selectionGroupFor(compoundProcessesSelection, process);
            var processSelection      = await _processMappingMapper.MapToModel(compoundProcessSelection, process);

            processSelectionGroup.AddProcessSelection(processSelection);
        }
 public CompoundProcessSnapshotContext(Model.CompoundProcess process, SnapshotContext baseContext) : base(baseContext)
 {
     Process = process;
 }