public Pager(IFhirStore store, ISnapshotStore snapshotstore, ILocalhost localhost, Transfer transfer)
{
this.store = store;
this.snapshotstore = snapshotstore;
this.localhost = localhost;
this.transfer = transfer;
}
public SnapshotPaginationProvider(IFhirStore fhirStore, ITransfer transfer, ILocalhost localhost, ISnapshotPaginationCalculator snapshotPaginationCalculator)
{
this.fhirStore = fhirStore;
this.transfer = transfer;
this.localhost = localhost;
_snapshotPaginationCalculator = snapshotPaginationCalculator;
}
public Pager(IFhirStore store, ISnapshotStore snapshotstore, ILocalhost localhost, Transfer transfer)
{
this.store = store;
this.snapshotstore = snapshotstore;
this.localhost = localhost;
this.transfer = transfer;
}
public MongoFhirStoreOther(string mongoUrl, IFhirStore mongoFhirStoreOther)
{
_mongoFhirStoreOther = mongoFhirStoreOther;
this.database = MongoDatabaseFactory.GetMongoDatabase(mongoUrl);
this.collection = database.GetCollection <BsonDocument>(Collection.RESOURCE);
//this.transaction = new MongoSimpleTransaction(collection);
}
public Pager(IFhirStore fhirStore, ISnapshotStore snapshotstore, ILocalhost localhost, Transfer transfer, List<ModelInfo.SearchParamDefinition> searchParameters)
{
this.fhirStore = fhirStore;
this.snapshotstore = snapshotstore;
this.localhost = localhost;
this.transfer = transfer;
this.searchParameters = searchParameters;
}
public InitializeHub(FhirService fhirService, ILocalhost localhost, IFhirStore fhirStore, IFhirIndex fhirIndex)
{
this.localhost = localhost;
this.fhirService = fhirService;
this.fhirStore = fhirStore;
this.fhirIndex = fhirIndex;
this.resources = null;
}
public InitializeHub()
{
this.localhost = InfrastructureProvider.Mongo.Localhost;
this.service = InfrastructureProvider.Mongo.CreateService();
this.store = InfrastructureProvider.Mongo.Store;
this.index = InfrastructureProvider.Mongo.Index;
this.resources = null;
}
public InitializeHub()
{
this.localhost = InfrastructureProvider.Mongo.Localhost;
this.service = InfrastructureProvider.Mongo.CreateService();
this.store = InfrastructureProvider.Mongo.Store;
this.index = InfrastructureProvider.Mongo.Index;
this.resources = null;
}
public MaintenanceService(Infrastructure infrastructure, FhirService service)
{
this.service = service;
this.localhost = infrastructure.Localhost;
this.generator = infrastructure.Generator;
this.store = infrastructure.Store;
this.index = infrastructure.Index;
}
public Pager(IFhirStore fhirStore, ISnapshotStore snapshotstore, ILocalhost localhost, Transfer transfer, List <ModelInfo.SearchParamDefinition> searchParameters)
{
this.fhirStore = fhirStore;
this.snapshotstore = snapshotstore;
this.localhost = localhost;
this.transfer = transfer;
this.searchParameters = searchParameters;
}
public MaintenanceService(FhirService fhirService, ILocalhost localhost, IGenerator keyGenerator, IFhirStore fhirStore, IFhirIndex fhirIndex)
{
this.fhirService = fhirService;
this.localhost = localhost;
this.keyGenerator = keyGenerator;
this.fhirStore = fhirStore;
this.fhirIndex = fhirIndex;
}
public MaintenanceService(FhirService fhirService, ILocalhost localhost, IGenerator keyGenerator, IFhirStore fhirStore, IFhirIndex fhirIndex)
{
this.fhirService = fhirService;
this.localhost = localhost;
this.keyGenerator = keyGenerator;
this.fhirStore = fhirStore;
this.fhirIndex = fhirIndex;
}
public InitializeHub(FhirService fhirService, ILocalhost localhost, IFhirStore fhirStore, IFhirIndex fhirIndex)
{
this.localhost = localhost;
this.fhirService = fhirService;
this.fhirStore = fhirStore;
this.fhirIndex = fhirIndex;
this.resources = null;
}
public MaintenanceService(Infrastructure infrastructure, FhirService service)
{
this.service = service;
this.localhost = infrastructure.Localhost;
this.generator = infrastructure.Generator;
this.store = infrastructure.Store;
this.index = infrastructure.Index;
}
public FhirService(Uri serviceBase)
{
store = DependencyCoupler.Inject<IFhirStore>(); // new MongoFhirStore();
_index = DependencyCoupler.Inject<IFhirIndex>(); // Factory.Index;
_importer = DependencyCoupler.Inject<ResourceImporter>();
exporter = DependencyCoupler.Inject<ResourceExporter>();
pager = new Pager(store);
Endpoint = serviceBase;
}
public FhirService(Uri serviceBase)
{
_store = DependencyCoupler.Inject <IFhirStore>(); // new MongoFhirStore();
_index = DependencyCoupler.Inject <IFhirIndex>(); // Factory.Index;
_importer = DependencyCoupler.Inject <ResourceImporter>();
_exporter = DependencyCoupler.Inject <ResourceExporter>();
_pager = new Pager(_store);
Endpoint = serviceBase;
}
protected virtual IFhirServiceExtension GetStorage()
{
IFhirStore fhirStore = fhirStoreBuilder.GetStore <IFhirStore>();
IGenerator fhirGenerator = fhirStoreBuilder.GetStore <IGenerator>();
if (fhirStore != null)
{
return(new ResourceStorageService(new Transfer(fhirGenerator, new Localhost(baseUri)), fhirStore));
}
return(null);
}
public FhirService(Infrastructure infrastructure)
{
this.localhost = infrastructure.Localhost;
this.store = infrastructure.Store;
this.snapshotstore = infrastructure.SnapshotStore;
this.generator = infrastructure.Generator;
this.index = infrastructure.Index;
this.listener = infrastructure.ServiceListener;
transfer = new Transfer(generator, localhost);
pager = new Pager(store, snapshotstore, localhost, transfer);
}
public FhirService(Infrastructure infrastructure)
{
this.localhost = infrastructure.Localhost;
this.store = infrastructure.Store;
this.snapshotstore = infrastructure.SnapshotStore;
this.generator = infrastructure.Generator;
this.index = infrastructure.Index;
this.listener = infrastructure.ServiceListener;
transfer = new Transfer(generator, localhost);
pager = new Pager(store, snapshotstore, localhost, transfer);
}
public static ResourceImporter GetResourceImporter()
{
IFhirStore store = GetMongoFhirStore();
ResourceImporter importer = new ResourceImporter(store, Settings.Endpoint);
importer.SharedEndpoints.Add("http://hl7.org/fhir/");
importer.SharedEndpoints.Add("localhost");
importer.SharedEndpoints.Add("localhost.");
return(importer);
}
protected virtual IFhirServiceExtension GetPaging()
{
IFhirStore fhirStore = fhirStoreBuilder.GetStore <IFhirStore>();
ISnapshotStore snapshotStore = fhirStoreBuilder.GetStore <ISnapshotStore>();
IGenerator storeGenerator = fhirStoreBuilder.GetStore <IGenerator>();
if (fhirStore != null)
{
return(new PagingService(snapshotStore, new SnapshotPaginationProvider(fhirStore, new Transfer(storeGenerator, new Localhost(baseUri)), new Localhost(baseUri), new SnapshotPaginationCalculator())));
}
return(null);
}
public SnapshotPaginationService(
IFhirStore fhirStore,
ITransfer transfer,
ILocalhost localhost,
ISnapshotPaginationCalculator snapshotPaginationCalculator,
Snapshot snapshot)
{
_fhirStore = fhirStore;
_transfer = transfer;
_localhost = localhost;
_snapshotPaginationCalculator = snapshotPaginationCalculator;
_snapshot = snapshot;
}
public FhirService(Uri endpoint)
{
//refac: store = DependencyCoupler.Inject<IFhirStore>(); // new MongoFhirStore();
store = DependencyCoupler.Inject <IFhirStore>();
tagstore = DependencyCoupler.Inject <ITagStore>();
generator = DependencyCoupler.Inject <IGenerator>();
index = DependencyCoupler.Inject <IFhirIndex>(); // Factory.Index;
importer = DependencyCoupler.Inject <ResourceImporter>();
exporter = DependencyCoupler.Inject <ResourceExporter>();
pager = new Pager(store, exporter);
Endpoint = endpoint;
}
public FhirService(Uri endpoint)
{
//refac: store = DependencyCoupler.Inject<IFhirStore>(); // new MongoFhirStore();
store = DependencyCoupler.Inject<IFhirStore>();
tagstore = DependencyCoupler.Inject<ITagStore>();
generator = DependencyCoupler.Inject<IGenerator>();
index = DependencyCoupler.Inject<IFhirIndex>(); // Factory.Index;
importer = DependencyCoupler.Inject<ResourceImporter>();
exporter = DependencyCoupler.Inject<ResourceExporter>();
pager = new Pager(store, exporter);
Endpoint = endpoint;
}
public string GenerateQuery(IFhirStore store, string resourceType, NameValueCollection parms)
{
var where = new StringBuilder();
//Select statement for Resource
var select = new StringBuilder();
select.Append(store.SelectAllQuery);
foreach (string key in parms)
{
var value = parms[key];
pmap.TryGetValue(resourceType + "." + key, out var parmdef);
if (parmdef == null)
{
continue;
}
//TODO Handle Setting up Parm Type and process value for prefix and modifiers
//Add JOINS to select
pmap.TryGetValue(resourceType + "." + key + ".join", out var join);
if (join != null)
{
if (!select.ToString().Contains(join))
{
select.Append(" " + join);
}
}
//Add Where clauses/bind values
pmap.TryGetValue(resourceType + "." + key + ".default", out var querypiece);
if (querypiece == null)
{
continue;
}
where.Append(where.Length == 0 ? " WHERE (" : " and (");
//Handle bind values single or multiple
var vals = value.Split(',');
foreach (var s in vals)
{
var currentpiece = querypiece;
var t = s.Split('|');
var x = 0;
currentpiece = t.Aggregate(currentpiece, (current, u) => current.Replace("~v" + x++ + "~", u));
where.Append("(" + currentpiece + ") OR ");
}
where.Remove(where.Length - 3, 3);
where.Append(")");
}
return(select + where.ToString());
}
//TODO: Inject Storage Implementation
public ResourceController(IFhirStore store)
{
var s = CloudConfigurationManager.GetSetting("FHIRParserMode");
var strict = s == null || s.Equals("strict", StringComparison.CurrentCultureIgnoreCase);
storage = store;
var parsersettings = new ParserSettings
{
AcceptUnknownMembers = !strict,
AllowUnrecognizedEnums = !strict
};
jsonparser = new FhirJsonParser(parsersettings);
xmlparser = new FhirXmlParser(parsersettings);
}
public FhirService(ILocalhost localhost, IFhirStore fhirStore, ISnapshotStore snapshotStore, IGenerator keyGenerator,
IFhirIndex fhirIndex, IServiceListener serviceListener, IFhirResponseFactory responseFactory, IndexService indexService)
{
this.localhost = localhost;
this.fhirStore = fhirStore;
this.snapshotstore = snapshotStore;
this.keyGenerator = keyGenerator;
this.fhirIndex = fhirIndex;
this.serviceListener = serviceListener;
this.responseFactory = responseFactory;
_indexService = indexService;
transfer = new Transfer(this.keyGenerator, localhost);
pager = new Pager(this.fhirStore, snapshotstore, localhost, transfer, ModelInfo.SearchParameters);
//TODO: Use FhirModel instead of ModelInfo for the searchparameters.
}
public FhirService(ILocalhost localhost, IFhirStore fhirStore, ISnapshotStore snapshotStore, IGenerator keyGenerator,
IFhirIndex fhirIndex, IServiceListener serviceListener, IFhirResponseFactory responseFactory, IndexService indexService)
{
this.localhost = localhost;
this.fhirStore = fhirStore;
this.snapshotstore = snapshotStore;
this.keyGenerator = keyGenerator;
this.fhirIndex = fhirIndex;
this.serviceListener = serviceListener;
this.responseFactory = responseFactory;
_indexService = indexService;
transfer = new Transfer(this.keyGenerator, localhost);
pager = new Pager(this.fhirStore, snapshotstore, localhost, transfer, ModelInfo.SearchParameters);
//TODO: Use FhirModel instead of ModelInfo for the searchparameters.
}
private static void AddTaggedPatient()
{
IFhirStore store = Spark.Store.MongoStoreFactory.GetMongoFhirStore();
var patient = new Patient();
patient.Id = "Patient/tagged";
patient.Name = new List <HumanName>();
patient.Name.Add(new HumanName()
{
Given = new string[] { "Truus" }, Family = new string[] { "Tagged" }
});
ResourceEntry patientRE = ResourceEntry.Create(patient);
patientRE.Id = new Uri("Patient/tagged", UriKind.Relative);
patientRE.SelfLink = new Uri("Patient/tagged", UriKind.Relative);
patientRE.Tags.Add(new Tag(_otherTag, Tag.FHIRTAGSCHEME_GENERAL, "dummy"));
store.Add(patientRE);
index.Process(patientRE);
}
public ResourceImporter(IFhirStore store, Uri endpoint)
{
_endpoint = endpoint;
_store = store;
SharedEndpoints.Add(_endpoint);
}
public Pager(IFhirStore store)
{
this._store = store;
}
public ResourceStorageService(ITransfer transfer, IFhirStore fhirStore)
{
this.transfer = transfer;
this.fhirStore = fhirStore;
}
public FhirResponseFactory(IFhirStore fhirStore, Transfer transfer, IFhirResponseInterceptorRunner interceptorRunner)
{
this.fhirStore = fhirStore;
this.transfer = transfer;
this.interceptorRunner = interceptorRunner;
}
public ResourceStorageService(ITransfer transfer, IFhirStore fhirStore)
{
_transfer = transfer;
_fhirStore = fhirStore;
}
public Pager(IFhirStore store, ResourceExporter exporter)
{
this.store = store;
this.exporter = exporter;
}
public FhirResponseFactory(IFhirStore fhirStore, Transfer transfer, IFhirResponseInterceptorRunner interceptorRunner)
{
this.fhirStore = fhirStore;
this.transfer = transfer;
this.interceptorRunner = interceptorRunner;
}
public Pager(IFhirStore store)
{
this._store = store;
}
public static async Task <List <Resource> > ProcessIncludesAsync(Resource source, NameValueCollection parms, IFhirStore store)
{
var retVal = new List <Resource>();
var includeparm = parms["_include"];
if (!string.IsNullOrEmpty(includeparm))
{
var serialize = new FhirJsonSerializer();
var j = serialize.SerializeToString(source);
var incs = includeparm.Split(',');
foreach (var t in incs)
{
var isinstance = false;
var s = t.Split(':');
if (s.Length <= 1)
{
continue;
}
var prop = s[1];
JToken x = null;
try
{
if (prop.Equals("substance"))
{
x = j[Convert.ToInt32("suspectEntity")];
isinstance = true;
}
else
{
x = j[Convert.ToInt32(prop)];
}
}
catch
{
// ignored
}
if (x == null)
{
continue;
}
for (var i = 0; i < x.Count(); i++)
{
var x1 = x.Type == JTokenType.Array ? x[i] : x;
var z = isinstance ? x1["instance"]["reference"].ToString() : x1["reference"].ToString();
var split = z.Split('/');
if (split.Length <= 1)
{
continue;
}
var a1 = await store.LoadFhirResourceAsync(split[1], split[0]).ConfigureAwait(false);
if (a1 != null)
{
retVal.Add(a1);
}
}
}
}
return(retVal);
}
public ResourceImporter(IFhirStore store, Uri endpoint)
{
_endpoint = endpoint;
_store = store;
SharedEndpoints.Add(_endpoint);
}
public Pager(IFhirStore store, ResourceExporter exporter)
{
this.store = store;
this.exporter = exporter;
}
