public WorkspaceData(WorkspaceData workspaceData)
{
DbWorkspaceId = workspaceData.DbWorkspaceId;
LastChangeLogId = workspaceData.LastChangeLogId;
Peptides = workspaceData.Peptides;
MsDataFiles = workspaceData.MsDataFiles;
PeptideAnalyses = workspaceData.PeptideAnalyses;
TracerDefs = workspaceData.TracerDefs;
Settings = workspaceData.Settings;
Modifications = workspaceData.Modifications;
}
public WorkspaceData(WorkspaceData workspaceData)
{
DbWorkspaceId = workspaceData.DbWorkspaceId;
LastChangeLogId = workspaceData.LastChangeLogId;
Peptides = workspaceData.Peptides;
MsDataFiles = workspaceData.MsDataFiles;
PeptideAnalyses = workspaceData.PeptideAnalyses;
TracerDefs = workspaceData.TracerDefs;
Settings = workspaceData.Settings;
Modifications = workspaceData.Modifications;
}
protected bool Equals(WorkspaceData other)
{
return(DbWorkspaceId == other.DbWorkspaceId &&
LastChangeLogId == other.LastChangeLogId &&
Equals(Peptides, other.Peptides) &&
Equals(MsDataFiles, other.MsDataFiles) &&
Equals(PeptideAnalyses, other.PeptideAnalyses) &&
Equals(TracerDefs, other.TracerDefs) &&
Equals(Settings, other.Settings) &&
Equals(Modifications, other.Modifications));
}
public void SetData(WorkspaceData workspaceData)
{
var dataFileIds =
_alignments.Keys.Select(key => key.FromId)
.Concat(_alignments.Keys.Select(key => key.ToId))
.Distinct()
.ToArray();
var changedDataFileIds = new HashSet<long>();
foreach (var dataFileId in dataFileIds)
{
if (!Equals(GetRetentionTimes(dataFileId), GetRetentionTimes(workspaceData, dataFileId)))
{
changedDataFileIds.Add(dataFileId);
}
}
if (changedDataFileIds.Count > 0)
{
_alignments = ImmutableSortedList.FromValues(
_alignments.Where(pair
=> !changedDataFileIds.Contains(pair.Key.FromId)
&& !changedDataFileIds.Contains(pair.Key.ToId)));
}
WorkspaceData = workspaceData;
}
public WorkspaceChangeArgs(WorkspaceData originalData, WorkspaceData originalSavedData)
{
OriginalData = originalData;
OriginalSavedData = originalSavedData;
}
protected bool Equals(WorkspaceData other)
{
return DbWorkspaceId == other.DbWorkspaceId
&& LastChangeLogId == other.LastChangeLogId
&& Equals(Peptides, other.Peptides)
&& Equals(MsDataFiles, other.MsDataFiles)
&& Equals(PeptideAnalyses, other.PeptideAnalyses)
&& Equals(TracerDefs, other.TracerDefs)
&& Equals(Settings, other.Settings)
&& Equals(Modifications, other.Modifications);
}
public RetentionTimeAlignments(WorkspaceData workspaceData)
{
WorkspaceData = workspaceData;
_alignments = ImmutableSortedList<AlignmentKey, RetentionTimeAlignment>.EMPTY;
}
static ImmutableSortedList<string, double> GetRetentionTimes(WorkspaceData workspaceData, long dataFileId)
{
var msDataFiles = workspaceData.MsDataFiles;
if (null == msDataFiles)
{
return null;
}
MsDataFileData msDataFileData;
if (msDataFiles.TryGetValue(dataFileId, out msDataFileData))
{
return msDataFileData.RetentionTimesByModifiedSequence;
}
return null;
}
