public void Match_WithCorrespondingPupMlstRecord_FindsMatchAndCreatesPubMlstIsolate()
{
var sut = CreatePubMlstMatcher();
var pubMlstIsolate = MockData.CreateInstance <NeisseriaPubMlstIsolate>();
pubMlstIsolate.PubMlstId = 18377;
_pubMlstService.GetIsolateByReference("DE1").Returns(pubMlstIsolate);
var result = sut.Match(new FromToQuery {
From = _firstDayMorning, To = _firstDayMorning.AddDays(1)
});
var match = result.First();
match.PubMlstId.Should().Be(18377);
match.StemNumber.Should().Be("DE1");
var pubMlstIsolateId = match.NeisseriaPubMlstIsolateId.Should().HaveValue().And.Subject;
_database.NeisseriaPubMlstIsolates.Find(pubMlstIsolateId).Should().NotBeNull();
var isolate = _database.MeningoIsolates.First();
isolate.NeisseriaPubMlstIsolate.Should().NotBeNull();
match.LaboratoryNumber.Should().Be(isolate.LaboratoryNumberWithPrefix);
}
public void GetIsolateByReference_SchemesPropertyNull_OtherValuesAreSet()
{
var controller = new PubMlstService(GetUrlReturningIsolateWithoutSchemes, PostUrlReturnsResult);
var isolate = controller.GetIsolateByReference("DE14505");
isolate.PubMlstId.Should().Be(93683);
isolate.PorAVr1.Should().Be("5");
isolate.PorAVr2.Should().Be("2");
isolate.FetAVr.Should().Be("F3-6");
isolate.PorB.Should().Be("2-2");
isolate.Fhbp.Should().Be("1511");
isolate.Nhba.Should().Be("20");
isolate.NadA.Should().Be("");
isolate.PenA.Should().Be("1");
isolate.GyrA.Should().Be("4");
isolate.ParC.Should().Be("1");
isolate.ParE.Should().Be("1");
isolate.RpoB.Should().Be("4");
isolate.RplF.Should().Be("1");
isolate.PorAVr1.Should().Be("5");
isolate.PorAVr2.Should().Be("2");
isolate.SequenceType.Should().BeNull();
isolate.ClonalComplex.Should().BeNull();
isolate.BexseroReactivity.Should().BeNull();
isolate.TrumenbaReactivity.Should().BeNull();
}
public List <PubMlstMatchInfo> Match(FromToQuery fromTo)
{
var matches = new List <PubMlstMatchInfo>();
var matchingIsolates = _db.MeningoIsolates.Include(i => i.Sending).Where(i =>
i.Sending.SamplingDate == null && i.Sending.ReceivingDate >= fromTo.From && i.Sending.ReceivingDate <= fromTo.To ||
i.Sending.SamplingDate >= fromTo.From && i.Sending.SamplingDate <= fromTo.To).ToList();
foreach (var isolate in matchingIsolates)
{
var pubMlstMatchInfo = new PubMlstMatchInfo
{
IsolateId = isolate.MeningoIsolateId,
StemNumber = isolate.StemNumberWithPrefix,
LaboratoryNumber = isolate.LaboratoryNumberWithPrefix
};
var pubMlstIsolate =
isolate.StemNumber.HasValue
? _pubMlstService.GetIsolateByReference(isolate.StemNumberWithPrefix)
: null;
if (pubMlstIsolate != null)
{
pubMlstIsolate = CreateOrUpdatePubMlstIsolate(isolate, pubMlstIsolate);
_db.MarkAsModified(isolate);
_db.SaveChanges();
pubMlstMatchInfo.NeisseriaPubMlstIsolateId = pubMlstIsolate.NeisseriaPubMlstIsolateId;
pubMlstMatchInfo.PubMlstId = pubMlstIsolate.PubMlstId;
}
matches.Add(pubMlstMatchInfo);
}
return(matches);
}
public void GetIsolateByReference_InexistingIsolate_ReturnsNull()
{
var controller = new PubMlstService(GetUrlReturns404, PostUrlReturns404);
var isolate = controller.GetIsolateByReference("DE14");
isolate.Should().BeNull();
}
public void GetIsolateByReference_InexistingIsolateWithoutMock_ReturnsNull()
{
var controller = new PubMlstService();
var isolate = controller.GetIsolateByReference("DE14");
isolate.Should().BeNull();
}
public void GetIsolateByReference_ExistingIsolateWithoutMock_FieldsAreSet()
{
var controller = new PubMlstService();
var isolate = controller.GetIsolateByReference("DE14692");
isolate.PorAVr1.Should().Be("7-1");
isolate.PorAVr2.Should().Be("1");
isolate.SequenceType.Should().BeNull();
isolate.ClonalComplex.Should().BeNull();
}
public void GetIsolateByReference_ExistingIsolate_FieldsAreSet()
{
var controller = new PubMlstService(GetUrlReturningIsolate, PostUrlReturnsResult);
var isolate = controller.GetIsolateByReference("DE14505");
isolate.PubMlstId.Should().Be(93683);
isolate.PorAVr1.Should().Be("5");
isolate.PorAVr2.Should().Be("2");
isolate.SequenceType.Should().Be("23");
isolate.ClonalComplex.Should().Be("ST-23 complex");
}
public void GetIsolateByReference_FieldsPropertyNull_OtherValuesAreSet()
{
var controller = new PubMlstService(GetUrlReturningIsolateWithoutFields, PostUrlReturnsResult);
var isolate = controller.GetIsolateByReference("DE14505");
isolate.PubMlstId.Should().Be(93683);
isolate.PorAVr1.Should().Be("5");
isolate.PorAVr2.Should().Be("2");
isolate.SequenceType.Should().BeNull();
isolate.ClonalComplex.Should().BeNull();
isolate.BexseroReactivity.Should().BeNull();
isolate.TrumenbaReactivity.Should().BeNull();
}