//Constructs the document and places it in the provided state
public NuGenDocument(DigitizeState state)
{
listeners = new List <NuGenImageListener>();
pointSets = new NuGenPointSetCollection();
segments = new NuGenSegmentCollection();
transform = new NuGenScreenTranslate(this);
gridDisplay = new List <GridlineScreen>();
digitizeState = state;
matchSet = new NuGenMatchSet(pointMatchSettings);
//load all of the settings
NuGenDefaultSettings rSettings = NuGenDefaultSettings.GetInstance();
coordSettings = rSettings.CoordSettings;
exportSettings = rSettings.ExportSettings;
segmentSettings = rSettings.SegmentSettings;
pointMatchSettings = rSettings.PointMatchSettings;
gridRemovalSettings = rSettings.GridRemovalSettings;
gridDisplaySettings.initialized = false;
gridDisplaySettings.gridSetX = rSettings.GridDisplayGridSetX;
gridDisplaySettings.gridSetY = rSettings.GridDisplayGridSetY;
discretizeSettings = rSettings.DiscretizeSettings;
backgroundSelection = rSettings.BackgroundSelection;
}
//Removes pixels around user defined gridlines
private void RemoveGridlines(PixelState[,] pixels, NuGenScreenTranslate transform,
CoordSettings coordSettings, GridRemovalSettings gridRemovalSettings, PixelState pxState)
{
if (transform.ValidAxes)
{
List <GridlineScreen> gridlines;
gridlines = NuGenGridMesh.MakeGridLines(transform, coordSettings, gridRemovalSettings.gridMesh);
foreach (GridlineScreen gridline in gridlines)
{
int xStart = gridline.Start.X;
int yStart = gridline.Start.Y;
int xStop = gridline.Stop.X;
int yStop = gridline.Stop.Y;
if (Math.Abs(xStop - xStart) < Math.Abs(yStop - yStart))
{
//Vertical lines
RemoveGridlineVertical(pixels, xStart, yStart, xStop, yStop, gridRemovalSettings, pxState);
}
else
{
//Horizontal lines
RemoveGridlineHorizontal(pixels, xStart, yStart, xStop, yStop, gridRemovalSettings, pxState);
}
}
}
}
private static List <GridlineScreen> MakeGridTheta(NuGenScreenTranslate transform, CoordSettings coordSettings, GridMeshSettings gridMeshSettings)
{
int i;
int xStartS, yStartS, xStopS, yStopS;
double thetaG = gridMeshSettings.startX;
GridlineScreen gridline;
List <GridlineScreen> gridlines = new List <GridlineScreen>();
for (i = 0; i < gridMeshSettings.countX; i++)
{
transform.XThetaYRToScreen(coordSettings, thetaG, gridMeshSettings.startY, out xStartS, out yStartS);
transform.XThetaYRToScreen(coordSettings, thetaG, gridMeshSettings.stopY, out xStopS, out yStopS);
gridline.Start.X = xStartS;
gridline.Start.Y = yStartS;
gridline.Stop.X = xStopS;
gridline.Stop.Y = yStopS;
gridline.R = false;
thetaG += gridMeshSettings.stepX;
gridlines.Add(gridline); //Maybe not?
}
return(gridlines);
}
private static List <GridlineScreen> MakeGridX(NuGenScreenTranslate transform, CoordSettings coordSettings, GridMeshSettings gridMeshSettings)
{
int i;
int xStartS, yStartS, xStopS, yStopS;
double xG = gridMeshSettings.startX;
GridlineScreen gridline;
List <GridlineScreen> gridlines = new List <GridlineScreen>();
for (i = 0; i < gridMeshSettings.countX; i++)
{
gridline = new GridlineScreen();
transform.XThetaYRToScreen(coordSettings, xG, gridMeshSettings.startY, out xStartS, out yStartS);
transform.XThetaYRToScreen(coordSettings, xG, gridMeshSettings.stopY, out xStopS, out yStopS);
gridline.Start.X = xStartS;
gridline.Start.Y = yStartS;
gridline.Stop.X = xStopS;
gridline.Stop.Y = yStopS;
gridline.R = false;
gridlines.Add(gridline);
if (coordSettings.xThetaScale == Scale.Linear)
{
xG += gridMeshSettings.stepX;
}
else
{
xG *= gridMeshSettings.stepX;
}
}
return(gridlines);
}
public GridRemovalSettingsDialog(NuGenDocument doc)
{
this.settings = doc.GridRemovalSettings;
this.originalImage = doc.OriginalImage;
this.discretizeSettings = doc.DiscretizeSettings;
this.transform = doc.Transform;
this.bgColor = doc.BackgroundColor;
this.coordSettings = doc.CoordSettings;
if (doc.ValidAxes)
this.gridRemovalMesh = doc.GridDisplaySettings;
else
this.gridRemovalMesh.initialized = false;
discretizeSettings.discretizeMethod = DiscretizeMethod.DiscretizeForeground;
InitializeComponent();
InitializeDefaults();
if (!(doc.ValidAxes || doc.ValidScale))
{
textBox1.Enabled = false;
textBox2.Enabled = false;
checkBox2.Enabled = false;
checkBox2.Checked = false;
checkBox3.Enabled = false;
checkBox3.Checked = false;
}
histogram.ValueChanged = this.ValueChanged;
ValueChanged(true);
this.MaximumSize = Size;
}
// return bounds on the coordinates for just axis, or all, pointsets, and true if
// there were any coordinates
public bool AxisSetGraphLimits(CoordSettings coord, NuGenScreenTranslate transform,
ref double xThetaMin, ref double xThetaMax,
ref double yRMin, ref double yRMax)
{
UpdateGraphCoordinates(coord, transform);
// get limits
return(axesPointSet.PointSetGraphLimits(ref xThetaMin, ref xThetaMax, ref yRMin, ref yRMax));
}
private static List <GridlineScreen> MakeGridR(NuGenScreenTranslate transform, CoordSettings coordSettings, GridMeshSettings gridMeshSettings)
{
int i;
int xStartS = 0, yStartS = 0, xStopS = 1, yStopS = 1;
double rG = gridMeshSettings.startY;
GridlineScreen gridline;
List <GridlineScreen> gridlines = new List <GridlineScreen>();
for (i = 0; i < gridMeshSettings.countY; i++)
{
gridline = new GridlineScreen();
// for polar coordinates we simply piecewise define the elliptical arc until motivated
// to implement a better drawing algorithm. segments will be evenly spaced in angle
// some pdf documents describing alternative algorithms are found in the doc directory.
// it would have been elegant to use QCanvasEllipses but those are axis-aligned.
double delta = AngleSpacing(coordSettings.thetaUnits);
bool first = true;
for (double angle = gridMeshSettings.startX; angle < gridMeshSettings.stopX; angle += delta)
{
transform.XThetaYRToScreen(coordSettings, angle, rG, out xStopS, out yStopS);
if (first)
{
xStartS = xStopS;
yStartS = yStopS;
}
else
{
if (NuGenMath.VectorMagnitude(xStopS - xStartS, yStopS - yStartS, 0.0) >= pixelSpacing)
{
gridline.Start.X = xStartS;
gridline.Start.Y = yStartS;
gridline.Stop.X = xStopS;
gridline.Stop.Y = yStopS;
gridline.R = true;
xStartS = xStopS;
yStartS = yStopS;
}
}
first = false;
}
if (coordSettings.yRScale == Scale.Linear)
{
rG += gridMeshSettings.stepY;
}
else
{
rG *= gridMeshSettings.stepY;
}
}
return(gridlines);
}
// apply the transformation to set graph coordinates of the points in the curve and measure pointsets
public void UpdateGraphCoordinates(CoordSettings coord, NuGenScreenTranslate transform)
{
foreach (NuGenPoint point in points)
{
double xTheta, yR;
transform.ScreenToXThetaYR(coord, point.XScreen, point.YScreen, out xTheta, out yR);
point.XThetaGraph = xTheta;
point.YRGraph = yR;
}
}
private void InitializeThin(CoordSettings coordSettings, NuGenScreenTranslate transform, double thinThickness)
{
transform.XBasisScreen(coordSettings, out xBasisXS, out xBasisYS);
transform.YBasisScreen(coordSettings, out yBasisXS, out yBasisYS);
// initialize search patterns
InitializeThinSearch(thinThickness, xBasisXS, yBasisXS, searchPatternPlusX);
InitializeThinSearch(thinThickness, xBasisYS, yBasisYS, searchPatternPlusY);
InitializeThinSearch(thinThickness, -xBasisXS, yBasisXS, searchPatternMinusX);
InitializeThinSearch(thinThickness, xBasisYS, -yBasisYS, searchPatternMinusY);
}
// for curve pointsets connected as Single Valued Functions, since the graph coordinates
// of all points are updated, we must reconnect any points that were reordered. remember,
// a single valued function has only a single value per xTheta value, so the lines cannot overlap
public void ForceSingleValued(CoordSettings coord, NuGenScreenTranslate transform)
{
// quick exit if pointset is a closed contour, which is the case for all axis, scale and
// measure pointsets. curve pointsets may be either single valued functions, or closed contours
if (style.lineConnectAs != LineConnectAs.SingleValuedFunction)
{
return;
}
// quick exit if points are already in order
if (SingleValued(coord, transform))
{
return;
}
Comparison <NuGenPoint> comparison = new Comparison <NuGenPoint>(this.XThetaSort);
// sort the points by xTheta
points.Sort(comparison);
// to prevent having to remove N lines and then immediately adding N lines, we only
// adjust as many lines as necessary
NuGenPoint pOld = points[points.Count - 1];
NuGenPoint pOlder = null;
foreach (NuGenPoint pNew in points)
{
if (pOlder != null)
{
if ((pOlder.NextLine != pNew.PreviousLine) || (pNew.PreviousLine == null))
{
if (pOlder.NextLine == null)
{
pOlder.NextLine = pOld.NextLine;
pOld.NextLine = null;
}
pOlder.NextLine.start.X = pOlder.XScreen;
pOlder.NextLine.start.Y = pOlder.YScreen;
pOlder.NextLine.end.X = pNew.XScreen;
pOlder.NextLine.end.Y = pNew.YScreen;
pNew.PreviousLine = pOlder.NextLine;
}
}
else
{
pNew.PreviousLine = null;
}
pOlder = pNew;
}
}
private static List<GridlineScreen> MakeGridR(NuGenScreenTranslate transform, CoordSettings coordSettings, GridMeshSettings gridMeshSettings)
{
int i;
int xStartS = 0, yStartS = 0, xStopS = 1, yStopS = 1;
double rG = gridMeshSettings.startY;
GridlineScreen gridline;
List<GridlineScreen> gridlines = new List<GridlineScreen>();
for (i = 0; i < gridMeshSettings.countY; i++)
{
gridline = new GridlineScreen();
// for polar coordinates we simply piecewise define the elliptical arc until motivated
// to implement a better drawing algorithm. segments will be evenly spaced in angle
// some pdf documents describing alternative algorithms are found in the doc directory.
// it would have been elegant to use QCanvasEllipses but those are axis-aligned.
double delta = AngleSpacing(coordSettings.thetaUnits);
bool first = true;
for (double angle = gridMeshSettings.startX; angle < gridMeshSettings.stopX; angle += delta)
{
transform.XThetaYRToScreen(coordSettings, angle, rG, out xStopS, out yStopS);
if (first)
{
xStartS = xStopS;
yStartS = yStopS;
}
else
{
if (NuGenMath.VectorMagnitude(xStopS - xStartS, yStopS - yStartS, 0.0) >= pixelSpacing)
{
gridline.Start.X = xStartS;
gridline.Start.Y = yStartS;
gridline.Stop.X = xStopS;
gridline.Stop.Y = yStopS;
gridline.R = true;
xStartS = xStopS;
yStartS = yStopS;
}
}
first = false;
}
if (coordSettings.yRScale == Scale.Linear)
rG += gridMeshSettings.stepY;
else
rG *= gridMeshSettings.stepY;
}
return gridlines;
}
// apply the transformation to set graph coordinates of the points in the curves and
// measures. if the operation could cause points to be reordered to keep a curve
// single-valued then the optional update list should be used
public void UpdateGraphCoordinates(CoordSettings coord, NuGenScreenTranslate transform)
{
// apply transformation
foreach (NuGenPointSet pointSet in curveList)
{
pointSet.UpdateGraphCoordinates(coord, transform);
pointSet.ForceSingleValued(coord, transform);
}
foreach (NuGenPointSet pointSet in measureList)
{
pointSet.UpdateGraphCoordinates(coord, transform);
}
}
// true if pointset is single valued
private bool SingleValued(CoordSettings coord, NuGenScreenTranslate transform)
{
bool first = true;
double xThetaLast = 0.0, xTheta, yR;
foreach (NuGenPoint point in points)
{
transform.ScreenToXThetaYR(coord, point.XScreen, point.YScreen, out xTheta, out yR);
if (!first && (xTheta < xThetaLast))
{
return(false);
}
xThetaLast = xTheta;
first = false;
}
return(true);
}
public bool PointSetGraphLimits(CoordSettings coord, NuGenScreenTranslate transform,
ref double xThetaMin, ref double xThetaMax,
ref double yRMin, ref double yRMax)
{
// update and get axis limits
bool first = AxisSetGraphLimits(coord, transform, ref xThetaMin, ref xThetaMax, ref yRMin, ref yRMax);
SinglePointSetGraphLimits(scalePointSet, ref first, ref xThetaMin, ref xThetaMax, ref yRMin, ref yRMax);
foreach (NuGenPointSet pointset in curveList)
{
SinglePointSetGraphLimits(pointset, ref first, ref xThetaMin, ref xThetaMax, ref yRMin, ref yRMax);
}
foreach (NuGenPointSet pointset in measureList)
{
SinglePointSetGraphLimits(pointset, ref first, ref xThetaMin, ref xThetaMax, ref yRMin, ref yRMax);
}
return(!first);
}
//Makes gridlines from the given translation
public static List<GridlineScreen> MakeGridLines(NuGenScreenTranslate transform, CoordSettings coordSettings, GridMeshSettings gridMeshSettings)
{
List<GridlineScreen> list = new List<GridlineScreen>();
if (transform.ValidAxes)
{
if (coordSettings.frame == ReferenceFrame.Cartesian)
{
list.AddRange(MakeGridX(transform, coordSettings, gridMeshSettings));
list.AddRange(MakeGridY(transform, coordSettings, gridMeshSettings));
return list;
}
else
{
list.AddRange(MakeGridTheta(transform, coordSettings, gridMeshSettings));
list.AddRange(MakeGridR(transform, coordSettings, gridMeshSettings));
return list;
}
}
return list;
}
//Makes gridlines from the given translation
public static List <GridlineScreen> MakeGridLines(NuGenScreenTranslate transform, CoordSettings coordSettings, GridMeshSettings gridMeshSettings)
{
List <GridlineScreen> list = new List <GridlineScreen>();
if (transform.ValidAxes)
{
if (coordSettings.frame == ReferenceFrame.Cartesian)
{
list.AddRange(MakeGridX(transform, coordSettings, gridMeshSettings));
list.AddRange(MakeGridY(transform, coordSettings, gridMeshSettings));
return(list);
}
else
{
list.AddRange(MakeGridTheta(transform, coordSettings, gridMeshSettings));
list.AddRange(MakeGridR(transform, coordSettings, gridMeshSettings));
return(list);
}
}
return(list);
}
public GridRemovalSettingsDialog(NuGenDocument doc)
{
this.settings = doc.GridRemovalSettings;
this.originalImage = doc.OriginalImage;
this.discretizeSettings = doc.DiscretizeSettings;
this.transform = doc.Transform;
this.bgColor = doc.BackgroundColor;
this.coordSettings = doc.CoordSettings;
if (doc.ValidAxes)
{
this.gridRemovalMesh = doc.GridDisplaySettings;
}
else
{
this.gridRemovalMesh.initialized = false;
}
discretizeSettings.discretizeMethod = DiscretizeMethod.DiscretizeForeground;
InitializeComponent();
InitializeDefaults();
if (!(doc.ValidAxes || doc.ValidScale))
{
textBox1.Enabled = false;
textBox2.Enabled = false;
checkBox2.Enabled = false;
checkBox2.Checked = false;
checkBox3.Enabled = false;
checkBox3.Checked = false;
}
histogram.ValueChanged = this.ValueChanged;
ValueChanged(true);
this.MaximumSize = Size;
}
//Remove gridlines and reconnect gaps
public void RemoveAndConnect(NuGenScreenTranslate transform, CoordSettings coordSettings, GridRemovalSettings gridRemovalSettings, Color bgColor)
{
int width = bmp.Width;
int height = bmp.Height;
PixelState[,] pixels = InitializePixels();
// 1) Color removal
if (gridRemovalSettings.removeColor)
{
RemoveColor(pixels, gridRemovalSettings, PixelState.PixelOnRemovedStage1);
}
// 2) Remove pixels around gridlines
if (gridRemovalSettings.removeGridlines && gridRemovalSettings.gridDistance > 0.0)
{
RemoveGridlines(pixels, transform, coordSettings, gridRemovalSettings, PixelState.PixelOnRemovedStage2);
}
// 3) Remove thin lines parallel to the axes
if (gridRemovalSettings.removeThinLines && gridRemovalSettings.thinThickness > 0.0)
{
RemoveThinLines(pixels, coordSettings, transform, gridRemovalSettings.thinThickness,
PixelState.PixelOnRemovedStage3, PixelState.PixelOnRemovedStage4);
}
// Reconnect the gaps created from the prior steps
if (gridRemovalSettings.gapSeparation > 0.0)
{
ConnectNeuronsAcrossGaps(pixels, gridRemovalSettings.gapSeparation);
}
//Write the image
SavePixels(pixels, bgColor);
//Save the image
discretize.SetImage(bmp);
}
//Remove gridlines and reconnect gaps
public void RemoveAndConnect(NuGenScreenTranslate transform, CoordSettings coordSettings, GridRemovalSettings gridRemovalSettings, Color bgColor)
{
int width = bmp.Width;
int height = bmp.Height;
PixelState[,] pixels = InitializePixels();
// 1) Color removal
if (gridRemovalSettings.removeColor)
{
RemoveColor(pixels, gridRemovalSettings, PixelState.PixelOnRemovedStage1);
}
// 2) Remove pixels around gridlines
if (gridRemovalSettings.removeGridlines && gridRemovalSettings.gridDistance > 0.0)
{
RemoveGridlines(pixels, transform, coordSettings, gridRemovalSettings, PixelState.PixelOnRemovedStage2);
}
// 3) Remove thin lines parallel to the axes
if (gridRemovalSettings.removeThinLines && gridRemovalSettings.thinThickness > 0.0)
{
RemoveThinLines(pixels, coordSettings, transform, gridRemovalSettings.thinThickness,
PixelState.PixelOnRemovedStage3, PixelState.PixelOnRemovedStage4);
}
// Reconnect the gaps created from the prior steps
if (gridRemovalSettings.gapSeparation > 0.0)
{
ConnectNeuronsAcrossGaps(pixels, gridRemovalSettings.gapSeparation);
}
//Write the image
SavePixels(pixels, bgColor);
//Save the image
discretize.SetImage(bmp);
}
private static List<GridlineScreen> MakeGridTheta(NuGenScreenTranslate transform, CoordSettings coordSettings, GridMeshSettings gridMeshSettings)
{
int i;
int xStartS, yStartS, xStopS, yStopS;
double thetaG = gridMeshSettings.startX;
GridlineScreen gridline;
List<GridlineScreen> gridlines = new List<GridlineScreen>();
for (i = 0; i < gridMeshSettings.countX; i++)
{
transform.XThetaYRToScreen(coordSettings, thetaG, gridMeshSettings.startY, out xStartS, out yStartS);
transform.XThetaYRToScreen(coordSettings, thetaG, gridMeshSettings.stopY, out xStopS, out yStopS);
gridline.Start.X = xStartS;
gridline.Start.Y = yStartS;
gridline.Stop.X = xStopS;
gridline.Stop.Y = yStopS;
gridline.R = false;
thetaG += gridMeshSettings.stepX;
gridlines.Add(gridline); //Maybe not?
}
return gridlines;
}
private static List<GridlineScreen> MakeGridX(NuGenScreenTranslate transform, CoordSettings coordSettings, GridMeshSettings gridMeshSettings)
{
int i;
int xStartS, yStartS, xStopS, yStopS;
double xG = gridMeshSettings.startX;
GridlineScreen gridline;
List<GridlineScreen> gridlines = new List<GridlineScreen>();
for (i = 0; i < gridMeshSettings.countX; i++)
{
gridline = new GridlineScreen();
transform.XThetaYRToScreen(coordSettings, xG, gridMeshSettings.startY, out xStartS, out yStartS);
transform.XThetaYRToScreen(coordSettings, xG, gridMeshSettings.stopY, out xStopS, out yStopS);
gridline.Start.X = xStartS;
gridline.Start.Y = yStartS;
gridline.Stop.X = xStopS;
gridline.Stop.Y = yStopS;
gridline.R = false;
gridlines.Add(gridline);
if (coordSettings.xThetaScale == Scale.Linear)
xG += gridMeshSettings.stepX;
else
xG *= gridMeshSettings.stepX;
}
return gridlines;
}
// apply the transformation to set graph coordinates of the points in the curve and measure pointsets
public void UpdateGraphCoordinates(CoordSettings coord, NuGenScreenTranslate transform)
{
foreach (NuGenPoint point in points)
{
double xTheta, yR;
transform.ScreenToXThetaYR(coord, point.XScreen, point.YScreen, out xTheta, out yR);
point.XThetaGraph = xTheta;
point.YRGraph = yR;
}
}
private void InitializeThin(CoordSettings coordSettings, NuGenScreenTranslate transform, double thinThickness)
{
transform.XBasisScreen(coordSettings, out xBasisXS, out xBasisYS);
transform.YBasisScreen(coordSettings, out yBasisXS, out yBasisYS);
// initialize search patterns
InitializeThinSearch(thinThickness, xBasisXS, yBasisXS, searchPatternPlusX);
InitializeThinSearch(thinThickness, xBasisYS, yBasisYS, searchPatternPlusY);
InitializeThinSearch(thinThickness, -xBasisXS, yBasisXS, searchPatternMinusX);
InitializeThinSearch(thinThickness, xBasisYS, -yBasisYS, searchPatternMinusY);
}
//Removes pixels around user defined gridlines
private void RemoveGridlines(PixelState[,] pixels, NuGenScreenTranslate transform,
CoordSettings coordSettings, GridRemovalSettings gridRemovalSettings, PixelState pxState)
{
if (transform.ValidAxes)
{
List<GridlineScreen> gridlines;
gridlines = NuGenGridMesh.MakeGridLines(transform, coordSettings, gridRemovalSettings.gridMesh);
foreach (GridlineScreen gridline in gridlines)
{
int xStart = gridline.Start.X;
int yStart = gridline.Start.Y;
int xStop = gridline.Stop.X;
int yStop = gridline.Stop.Y;
if (Math.Abs(xStop - xStart) < Math.Abs(yStop - yStart))
{
//Vertical lines
RemoveGridlineVertical(pixels, xStart, yStart, xStop, yStop, gridRemovalSettings, pxState);
}
else
{
//Horizontal lines
RemoveGridlineHorizontal(pixels, xStart, yStart, xStop, yStop, gridRemovalSettings, pxState);
}
}
}
}
//Removes thin lines which are parallel to the user defined axes
private void RemoveThinLines(PixelState[,] pixels, CoordSettings coordSettings, NuGenScreenTranslate transform,
double thinThickness, PixelState pixelStateRemovedPass1, PixelState pixelStateRemovedPass2)
{
if (transform.ValidAxes)
{
InitializeThin(coordSettings, transform, thinThickness);
// first pass erases the gridMeshSettings lines, except for the junctions
EraseThinPixels(pixels, thinThickness, pixelStateRemovedPass1);
// second pass erases the gridMeshSettings line junctions, which are little islands of on-pixels
EraseThinPixels(pixels, thinThickness, pixelStateRemovedPass2);
}
}
// for curve pointsets connected as Single Valued Functions, since the graph coordinates
// of all points are updated, we must reconnect any points that were reordered. remember,
// a single valued function has only a single value per xTheta value, so the lines cannot overlap
public void ForceSingleValued(CoordSettings coord, NuGenScreenTranslate transform)
{
// quick exit if pointset is a closed contour, which is the case for all axis, scale and
// measure pointsets. curve pointsets may be either single valued functions, or closed contours
if (style.lineConnectAs != LineConnectAs.SingleValuedFunction)
return;
// quick exit if points are already in order
if (SingleValued(coord, transform))
return;
Comparison<NuGenPoint> comparison = new Comparison<NuGenPoint>(this.XThetaSort);
// sort the points by xTheta
points.Sort(comparison);
// to prevent having to remove N lines and then immediately adding N lines, we only
// adjust as many lines as necessary
NuGenPoint pOld = points[points.Count - 1];
NuGenPoint pOlder = null;
foreach (NuGenPoint pNew in points)
{
if (pOlder != null)
{
if ((pOlder.NextLine != pNew.PreviousLine) || (pNew.PreviousLine == null))
{
if (pOlder.NextLine == null)
{
pOlder.NextLine = pOld.NextLine;
pOld.NextLine = null;
}
pOlder.NextLine.start.X = pOlder.XScreen;
pOlder.NextLine.start.Y = pOlder.YScreen;
pOlder.NextLine.end.X = pNew.XScreen;
pOlder.NextLine.end.Y = pNew.YScreen;
pNew.PreviousLine = pOlder.NextLine;
}
}
else
{
pNew.PreviousLine = null;
}
pOlder = pNew;
}
}
// true if pointset is single valued
private bool SingleValued(CoordSettings coord, NuGenScreenTranslate transform)
{
bool first = true;
double xThetaLast = 0.0, xTheta, yR;
foreach(NuGenPoint point in points)
{
transform.ScreenToXThetaYR(coord, point.XScreen, point.YScreen, out xTheta, out yR);
if (!first && (xTheta < xThetaLast))
return false;
xThetaLast = xTheta;
first = false;
}
return true;
}
//Deserialization constructor.
public NuGenDocument(SerializationInfo info, StreamingContext ctxt)
{
backgroundSelection = (BackgroundSelection)info.GetValue("backgroundSelection", typeof(BackgroundSelection));
originalImage = (Image)info.GetValue("originalImage", typeof(Image));
title = (string)info.GetValue("title", typeof(string));
digitizeState = (DigitizeState)info.GetValue("digitizeState", typeof(DigitizeState));
currentCurveName = (string)info.GetValue("curveCmbText", typeof(string));
currentMeasureName = (string)info.GetValue("measureCmbText", typeof(string));
coordSettings.frame = (ReferenceFrame)info.GetValue("coordSettings.frame", typeof(ReferenceFrame));
coordSettings.thetaUnits = (ThetaUnits)info.GetValue("coordSettings.thetaUnits", typeof(ThetaUnits));
coordSettings.xThetaScale = (Scale)info.GetValue("coordSettings.xThetaScale", typeof(Scale));
coordSettings.yRScale = (Scale)info.GetValue("coordSettings.yRScale", typeof(Scale));
exportSettings.delimiters = (ExportDelimiters)info.GetValue("exportSettings.delimiters", typeof(ExportDelimiters));
exportSettings.layout = (ExportLayout)info.GetValue("exportSettings.layout", typeof(ExportLayout));
exportSettings.pointsSelection = (ExportPointsSelection)info.GetValue("exportSettings.pointsSelection", typeof(ExportPointsSelection));
exportSettings.header = (ExportHeader)info.GetValue("exportSettings.header", typeof(ExportHeader));
gridRemovalSettings.removeThinLines = (bool)info.GetValue("gridRemovalSettings.removeThinLines", typeof(bool));
gridRemovalSettings.thinThickness = (double)info.GetValue("gridRemovalSettings.thinThickness", typeof(double));
gridRemovalSettings.removeGridlines = (bool)info.GetValue("gridRemovalSettings.removeGridlines", typeof(bool));
gridRemovalSettings.gridMesh.initialized = (bool)info.GetValue("gridRemovalSettings.gridMesh.initialized", typeof(bool));
gridRemovalSettings.gridMesh.countX = (int)info.GetValue("gridRemovalSettings.gridMesh.countX", typeof(int));
gridRemovalSettings.gridMesh.countY = (int)info.GetValue("gridRemovalSettings.gridMesh.countY", typeof(int));
gridRemovalSettings.gridMesh.gridSetX = (GridSet)info.GetValue("gridRemovalSettings.gridMesh.gridSetX", typeof(GridSet));
gridRemovalSettings.gridMesh.gridSetY = (GridSet)info.GetValue("gridRemovalSettings.gridMesh.gridSetY", typeof(GridSet));
gridRemovalSettings.gridMesh.startX = (double)info.GetValue("gridRemovalSettings.gridMesh.startX", typeof(double));
gridRemovalSettings.gridMesh.startY = (double)info.GetValue("gridRemovalSettings.gridMesh.startY", typeof(double));
gridRemovalSettings.gridMesh.stepX = (double)info.GetValue("gridRemovalSettings.gridMesh.stepX", typeof(double));
gridRemovalSettings.gridMesh.stepY = (double)info.GetValue("gridRemovalSettings.gridMesh.stepY", typeof(double));
gridRemovalSettings.gridMesh.stopX = (double)info.GetValue("gridRemovalSettings.gridMesh.stopX", typeof(double));
gridRemovalSettings.gridMesh.stopY = (double)info.GetValue("gridRemovalSettings.gridMesh.stopY", typeof(double));
gridRemovalSettings.gridDistance = (double)info.GetValue("gridRemovalSettings.gridDistance", typeof(double));
gridRemovalSettings.removeColor = (bool)info.GetValue("gridRemovalSettings.removeColor", typeof(bool));
gridRemovalSettings.color = (Color)info.GetValue("gridRemovalSettings.color", typeof(Color));
gridRemovalSettings.foregroundThresholdLow = (int)info.GetValue("gridRemovalSettings.foregroundThresholdLow", typeof(int));
gridRemovalSettings.foregroundThresholdHigh = (int)info.GetValue("gridRemovalSettings.foregroundThresholdHigh", typeof(int));
gridRemovalSettings.gapSeparation = (double)info.GetValue("gridRemovalSettings.gapSeparation", typeof(double));
gridDisplaySettings.initialized = (bool)info.GetValue("gridDisplaySettings.initialized", typeof(bool));
gridDisplaySettings.countX = (int)info.GetValue("gridDisplaySettings.countX", typeof(int));
gridDisplaySettings.countY = (int)info.GetValue("gridDisplaySettings.countY", typeof(int));
gridDisplaySettings.gridSetX = (GridSet)info.GetValue("gridDisplaySettings.gridSetX", typeof(GridSet));
gridDisplaySettings.gridSetY = (GridSet)info.GetValue("gridDisplaySettings.gridSetY", typeof(GridSet));
gridDisplaySettings.startX = (double)info.GetValue("gridDisplaySettings.startX", typeof(double));
gridDisplaySettings.startY = (double)info.GetValue("gridDisplaySettings.startY", typeof(double));
gridDisplaySettings.stepX = (double)info.GetValue("gridDisplaySettings.stepX", typeof(double));
gridDisplaySettings.stepY = (double)info.GetValue("gridDisplaySettings.stepY", typeof(double));
gridDisplaySettings.stopX = (double)info.GetValue("gridDisplaySettings.stopX", typeof(double));
gridDisplaySettings.stopY = (double)info.GetValue("gridDisplaySettings.stopY", typeof(double));
segmentSettings.minPoints = (int)info.GetValue("segmentSettings.minPoints", typeof(int));
segmentSettings.pointSeparation = (int)info.GetValue("segmentSettings.pointSeparation", typeof(int));
segmentSettings.lineSize = (LineSize)info.GetValue("segmentSettings.lineSize", typeof(LineSize));
segmentSettings.lineColor = (Color)info.GetValue("segmentSettings.lineColor", typeof(Color));
pointMatchSettings.pointSeparation = (int)info.GetValue("pointMatchSettings.pointSeparation", typeof(int));
pointMatchSettings.pointSize = (int)info.GetValue("pointMatchSettings.pointSize", typeof(int));
pointMatchSettings.acceptedColor = (Color)info.GetValue("pointMatchSettings.acceptedColor", typeof(Color));
pointMatchSettings.rejectedColor = (Color)info.GetValue("pointMatchSettings.rejectedColor", typeof(Color));
discretizeSettings.discretizeMethod = (DiscretizeMethod)info.GetValue("discretizeSettings.discretizeMethod", typeof(DiscretizeMethod));
discretizeSettings.intensityThresholdLow = (int)info.GetValue("discretizeSettings.intensityThresholdLow", typeof(int));
discretizeSettings.intensityThresholdHigh = (int)info.GetValue("discretizeSettings.intensityThresholdHigh", typeof(int));
discretizeSettings.foregroundThresholdLow = (int)info.GetValue("discretizeSettings.foregroundThresholdLow", typeof(int));
discretizeSettings.foregroundThresholdHigh = (int)info.GetValue("discretizeSettings.foregroundThresholdHigh", typeof(int));
discretizeSettings.hueThresholdLow = (int)info.GetValue("discretizeSettings.hueThresholdLow", typeof(int));
discretizeSettings.hueThresholdHigh = (int)info.GetValue("discretizeSettings.hueThresholdHigh", typeof(int));
discretizeSettings.saturationThresholdLow = (int)info.GetValue("discretizeSettings.saturationThresholdLow", typeof(int));
discretizeSettings.saturationThresholdHigh = (int)info.GetValue("discretizeSettings.saturationThresholdHigh", typeof(int));
discretizeSettings.valueThresholdLow = (int)info.GetValue("discretizeSettings.valueThresholdLow", typeof(int));
discretizeSettings.valueThresholdHigh = (int)info.GetValue("discretizeSettings.valueThresholdHigh", typeof(int));
pointSets = new NuGenPointSetCollection();
PointSets.SerializeRead(info);
saveFileExists = true;
dirtyAxesTransformation = true;
dirtyScaleTransformation = true;
listeners = new List <NuGenImageListener>();
segments = new NuGenSegmentCollection();
transform = new NuGenScreenTranslate(this);
gridDisplay = new List <GridlineScreen>();
matchSet = new NuGenMatchSet(pointMatchSettings);
ProcessOriginialImage();
}
//Removes thin lines which are parallel to the user defined axes
private void RemoveThinLines(PixelState[,] pixels, CoordSettings coordSettings, NuGenScreenTranslate transform,
double thinThickness, PixelState pixelStateRemovedPass1, PixelState pixelStateRemovedPass2)
{
if (transform.ValidAxes)
{
InitializeThin(coordSettings, transform, thinThickness);
// first pass erases the gridMeshSettings lines, except for the junctions
EraseThinPixels(pixels, thinThickness, pixelStateRemovedPass1);
// second pass erases the gridMeshSettings line junctions, which are little islands of on-pixels
EraseThinPixels(pixels, thinThickness, pixelStateRemovedPass2);
}
}
