public void ZeroMaxScore()
{
var scorer = new ZeroMaxScoreStringScorer();
var msa = new MultipleAlignmentAlgorithm <string, char>(scorer, new[] { "car", "bar", "carp" }, GetChars)
{
UseInputOrder = true
};
msa.Compute();
Alignment <string, char> alignment = msa.GetAlignment();
AssertAlignmentsEqual(alignment, CreateAlignment(
"| c a r - |",
"| b a r - |",
"| c a r p |"
));
Assert.That(alignment.NormalizedScore, Is.EqualTo(0));
}
public void ZeroMaxScore()
{
var scorer = new ZeroMaxScoreStringScorer();
var msa = new PairwiseAlignmentAlgorithm <string, char>(scorer, "car", "bar", GetChars)
{
ExpansionCompressionEnabled = true
};
msa.Compute();
Alignment <string, char>[] alignments = msa.GetAlignments().ToArray();
Assert.That(alignments.Length, Is.EqualTo(1));
AssertAlignmentsEqual(alignments[0], CreateAlignment(
"| c a r |",
"| b a r |"
));
Assert.That(alignments[0].NormalizedScore, Is.EqualTo(0));
}
public void ZeroMaxScore()
{
var scorer = new ZeroMaxScoreStringScorer();
var msa = new PairwiseAlignmentAlgorithm<string, char>(scorer, "car", "bar", GetChars) {ExpansionCompressionEnabled = true};
msa.Compute();
Alignment<string, char>[] alignments = msa.GetAlignments().ToArray();
Assert.That(alignments.Length, Is.EqualTo(1));
AssertAlignmentsEqual(alignments[0], CreateAlignment(
"| c a r |",
"| b a r |"
));
Assert.That(alignments[0].NormalizedScore, Is.EqualTo(0));
}
public void ZeroMaxScore()
{
var scorer = new ZeroMaxScoreStringScorer();
var msa = new MultipleAlignmentAlgorithm<string, char>(scorer, new[] {"car", "bar", "carp"}, GetChars) {UseInputOrder = true};
msa.Compute();
Alignment<string, char> alignment = msa.GetAlignment();
AssertAlignmentsEqual(alignment, CreateAlignment(
"| c a r - |",
"| b a r - |",
"| c a r p |"
));
Assert.That(alignment.NormalizedScore, Is.EqualTo(0));
}
