static void Instance_RemoveTargetsFilter(System.Collections.Generic.List<WoWObject> units)
{
for (int i = units.Count - 1; i >= 0; i--)
{
WoWUnit unit = units[i].ToUnit();
if (unit == null || !unit.IsValid || unit.IsFriendly )
{
units.RemoveAt(i);
continue;
}
}
}
private void FilterUnknownFrames(System.Collections.Generic.List<ThreadContext> stackFrames)
{
bool lastWasQuestion = false;
for (int i = 0; i < stackFrames.Count;)
{
// replace sequences of "??" with one UnknownCode frame
if (stackFrames[i].Function == null || stackFrames[i].Function.Equals("??", StringComparison.Ordinal))
{
if (lastWasQuestion)
{
stackFrames.RemoveAt(i);
continue;
}
lastWasQuestion = true;
stackFrames[i] = new ThreadContext(stackFrames[i].pc, stackFrames[i].TextPosition, ResourceStrings.UnknownCode, stackFrames[i].Level, null);
}
else
{
lastWasQuestion = false;
}
i++;
}
}
/*
public void UpdateCurrentSettings(System.Windows.Forms.BindingSource bs, bool updatenow)
{
UpdateCurrentSettings(bs, false, MainV2.comPort);
}
*/
public void UpdateCurrentSettings(System.Windows.Forms.BindingSource bs, bool updatenow, MAVLinkInterface mavinterface)
{
lock (this)
{
if (DateTime.Now > lastupdate.AddMilliseconds(50) || updatenow) // 20 hz
{
lastupdate = DateTime.Now;
//check if valid mavinterface
if (mavinterface != null && mavinterface.packetsnotlost != 0)
linkqualitygcs = (ushort)((mavinterface.packetsnotlost / (mavinterface.packetsnotlost + mavinterface.packetslost)) * 100.0);
if (DateTime.Now.Second != lastsecondcounter.Second)
{
lastsecondcounter = DateTime.Now;
if (lastpos.Lat != 0 && lastpos.Lng != 0 && armed)
{
if (!MainV2.comPort.BaseStream.IsOpen && !MainV2.comPort.logreadmode)
distTraveled = 0;
distTraveled += (float)lastpos.GetDistance(new PointLatLngAlt(lat, lng, 0, "")) * multiplierdist;
lastpos = new PointLatLngAlt(lat, lng, 0, "");
}
else
{
lastpos = new PointLatLngAlt(lat, lng, 0, "");
}
// throttle is up, or groundspeed is > 3 m/s
if (ch3percent > 12 || _groundspeed > 3.0)
timeInAir++;
if (!gotwind)
dowindcalc();
}
if (mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.STATUSTEXT] != null) // status text
{
var msg = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.STATUSTEXT].ByteArrayToStructure<MAVLink.mavlink_statustext_t>(6);
/*
enum gcs_severity {
SEVERITY_LOW=1,
SEVERITY_MEDIUM,
SEVERITY_HIGH,
SEVERITY_CRITICAL
};
*/
byte sev = msg.severity;
string logdata = Encoding.ASCII.GetString(mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.STATUSTEXT], 6, mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.STATUSTEXT].Length - 6);
int ind = logdata.IndexOf('\0');
if (ind != -1)
logdata = logdata.Substring(0, ind);
if (sev >= 3)
{
messageHigh = logdata;
messageHighTime = DateTime.Now;
}
try
{
while (messages.Count > 50)
{
messages.RemoveAt(0);
}
messages.Add(logdata + "\n");
}
catch { }
mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.STATUSTEXT] = null;
}
byte[] bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.RC_CHANNELS_SCALED];
if (bytearray != null) // hil mavlink 0.9
{
var hil = bytearray.ByteArrayToStructure<MAVLink.mavlink_rc_channels_scaled_t>(6);
hilch1 = hil.chan1_scaled;
hilch2 = hil.chan2_scaled;
hilch3 = hil.chan3_scaled;
hilch4 = hil.chan4_scaled;
hilch5 = hil.chan5_scaled;
hilch6 = hil.chan6_scaled;
hilch7 = hil.chan7_scaled;
hilch8 = hil.chan8_scaled;
// Console.WriteLine("RC_CHANNELS_SCALED Packet");
mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.RC_CHANNELS_SCALED] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.FENCE_STATUS];
if (bytearray != null)
{
var fence = bytearray.ByteArrayToStructure<MAVLink.mavlink_fence_status_t>(6);
if (fence.breach_status != (byte)MAVLink.FENCE_BREACH.NONE)
{
// fence breached
messageHigh = "Fence Breach";
messageHighTime = DateTime.Now;
}
mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.FENCE_STATUS] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.HIL_CONTROLS];
if (bytearray != null) // hil mavlink 0.9 and 1.0
{
var hil = bytearray.ByteArrayToStructure<MAVLink.mavlink_hil_controls_t>(6);
hilch1 = (int)(hil.roll_ailerons * 10000);
hilch2 = (int)(hil.pitch_elevator * 10000);
hilch3 = (int)(hil.throttle * 10000);
hilch4 = (int)(hil.yaw_rudder * 10000);
//MAVLink.packets[(byte)MAVLink.MSG_NAMES.HIL_CONTROLS] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.SYSTEM_TIME];
if (bytearray != null)
{
var systime = bytearray.ByteArrayToStructure<MAVLink.mavlink_system_time_t>(6);
DateTime newtime = DateTime.Now;
//UInt64 ms_per_week = 7000ULL*86400ULL;
//UInt64 unix_offset = 17000ULL*86400ULL + 52*10*7000ULL*86400ULL - 15000ULL;
//UInt64 fix_time_ms = unix_offset + time_week*ms_per_week + time_week_ms;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.HWSTATUS];
if (bytearray != null)
{
var hwstatus = bytearray.ByteArrayToStructure<MAVLink.mavlink_hwstatus_t>(6);
hwvoltage = hwstatus.Vcc / 1000.0f;
i2cerrors = hwstatus.I2Cerr;
//MAVLink.packets[(byte)MAVLink.MSG_NAMES.HWSTATUS] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.RANGEFINDER];
if (bytearray != null)
{
var sonar = bytearray.ByteArrayToStructure<MAVLink.mavlink_rangefinder_t>(6);
sonarrange = sonar.distance;
sonarvoltage = sonar.voltage;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.WIND];
if (bytearray != null)
{
var wind = bytearray.ByteArrayToStructure<MAVLink.mavlink_wind_t>(6);
gotwind = true;
wind_dir = (wind.direction + 360) % 360;
wind_vel = wind.speed * multiplierspeed;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.HEARTBEAT];
if (bytearray != null)
{
var hb = bytearray.ByteArrayToStructure<MAVLink.mavlink_heartbeat_t>(6);
if (hb.type == (byte)MAVLink.MAV_TYPE.GCS)
{
// skip gcs hb's
// only happens on log playback - and shouldnt get them here
}
else
{
armed = (hb.base_mode & (byte)MAVLink.MAV_MODE_FLAG.SAFETY_ARMED) == (byte)MAVLink.MAV_MODE_FLAG.SAFETY_ARMED;
// for future use
bool landed = hb.system_status == (byte)MAVLink.MAV_STATE.STANDBY;
failsafe = hb.system_status == (byte)MAVLink.MAV_STATE.CRITICAL;
string oldmode = mode;
if ((hb.base_mode & (byte)MAVLink.MAV_MODE_FLAG.CUSTOM_MODE_ENABLED) != 0)
{
// prevent running thsi unless we have to
if (_mode != hb.custom_mode)
{
List<KeyValuePair<int, string>> modelist = Common.getModesList(this);
bool found = false;
foreach (KeyValuePair<int, string> pair in modelist)
{
if (pair.Key == hb.custom_mode)
{
mode = pair.Value.ToString();
_mode = hb.custom_mode;
found = true;
break;
}
}
if (!found)
{
log.Warn("Mode not found bm:" + hb.base_mode + " cm:" + hb.custom_mode);
_mode = hb.custom_mode;
}
}
}
if (oldmode != mode && MainV2.speechEnable && MainV2.getConfig("speechmodeenabled") == "True")
{
MainV2.speechEngine.SpeakAsync(Common.speechConversion(MainV2.getConfig("speechmode")));
}
}
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.SYS_STATUS];
if (bytearray != null)
{
var sysstatus = bytearray.ByteArrayToStructure<MAVLink.mavlink_sys_status_t>(6);
load = (float)sysstatus.load / 10.0f;
battery_voltage = (float)sysstatus.voltage_battery / 1000.0f;
battery_remaining = (float)sysstatus.battery_remaining;
current = (float)sysstatus.current_battery / 100.0f;
packetdropremote = sysstatus.drop_rate_comm;
Mavlink_Sensors sensors_enabled = new Mavlink_Sensors(sysstatus.onboard_control_sensors_enabled);
Mavlink_Sensors sensors_health = new Mavlink_Sensors(sysstatus.onboard_control_sensors_health);
Mavlink_Sensors sensors_present = new Mavlink_Sensors(sysstatus.onboard_control_sensors_present);
if (sensors_health.gps != sensors_enabled.gps)
{
messageHigh = "Bad GPS Health";
messageHighTime = DateTime.Now;
}
else if (sensors_health.gyro != sensors_enabled.gyro)
{
messageHigh = "Bad Gyro Health";
messageHighTime = DateTime.Now;
}
else if (sensors_health.accelerometer != sensors_enabled.accelerometer)
{
messageHigh = "Bad Accel Health";
messageHighTime = DateTime.Now;
}
else if (sensors_health.compass != sensors_enabled.compass)
{
messageHigh = "Bad Compass Health";
messageHighTime = DateTime.Now;
}
else if (sensors_health.barometer != sensors_enabled.barometer)
{
messageHigh = "Bad Baro Health";
messageHighTime = DateTime.Now;
}
else if (sensors_health.optical_flow != sensors_enabled.optical_flow)
{
messageHigh = "Bad OptFlow Health";
messageHighTime = DateTime.Now;
}
else if (sensors_present.rc_receiver != sensors_enabled.rc_receiver)
{
messageHigh = "NO RC Receiver";
messageHighTime = DateTime.Now;
}
mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.SYS_STATUS] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.SCALED_PRESSURE];
if (bytearray != null)
{
var pres = bytearray.ByteArrayToStructure<MAVLink.mavlink_scaled_pressure_t>(6);
press_abs = pres.press_abs;
press_temp = pres.temperature;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.SENSOR_OFFSETS];
if (bytearray != null)
{
var sensofs = bytearray.ByteArrayToStructure<MAVLink.mavlink_sensor_offsets_t>(6);
mag_ofs_x = sensofs.mag_ofs_x;
mag_ofs_y = sensofs.mag_ofs_y;
mag_ofs_z = sensofs.mag_ofs_z;
mag_declination = sensofs.mag_declination;
raw_press = sensofs.raw_press;
raw_temp = sensofs.raw_temp;
gyro_cal_x = sensofs.gyro_cal_x;
gyro_cal_y = sensofs.gyro_cal_y;
gyro_cal_z = sensofs.gyro_cal_z;
accel_cal_x = sensofs.accel_cal_x;
accel_cal_y = sensofs.accel_cal_y;
accel_cal_z = sensofs.accel_cal_z;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.ATTITUDE];
if (bytearray != null)
{
var att = bytearray.ByteArrayToStructure<MAVLink.mavlink_attitude_t>(6);
roll = att.roll * rad2deg;
pitch = att.pitch * rad2deg;
yaw = att.yaw * rad2deg;
// Console.WriteLine(roll + " " + pitch + " " + yaw);
//MAVLink.packets[(byte)MAVLink.MSG_NAMES.ATTITUDE] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.GPS_RAW_INT];
if (bytearray != null)
{
var gps = bytearray.ByteArrayToStructure<MAVLink.mavlink_gps_raw_int_t>(6);
if (!useLocation)
{
lat = gps.lat * 1.0e-7f;
lng = gps.lon * 1.0e-7f;
// alt = gps.alt; // using vfr as includes baro calc
}
altasl = gps.alt / 1000.0f;
gpsstatus = gps.fix_type;
// Console.WriteLine("gpsfix {0}",gpsstatus);
gpshdop = (float)Math.Round((double)gps.eph / 100.0,2);
satcount = gps.satellites_visible;
groundspeed = gps.vel * 1.0e-2f;
groundcourse = gps.cog * 1.0e-2f;
//MAVLink.packets[(byte)MAVLink.MSG_NAMES.GPS_RAW] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.GPS_STATUS];
if (bytearray != null)
{
var gps = bytearray.ByteArrayToStructure<MAVLink.mavlink_gps_status_t>(6);
satcount = gps.satellites_visible;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.RADIO];
if (bytearray != null)
{
var radio = bytearray.ByteArrayToStructure<MAVLink.mavlink_radio_t>(6);
rssi = radio.rssi;
remrssi = radio.remrssi;
txbuffer = radio.txbuf;
rxerrors = radio.rxerrors;
noise = radio.noise;
remnoise = radio.remnoise;
fixedp = radio.@fixed;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.RADIO_STATUS];
if (bytearray != null)
{
var radio = bytearray.ByteArrayToStructure<MAVLink.mavlink_radio_status_t>(6);
rssi = radio.rssi;
remrssi = radio.remrssi;
txbuffer = radio.txbuf;
rxerrors = radio.rxerrors;
noise = radio.noise;
remnoise = radio.remnoise;
fixedp = radio.@fixed;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.GLOBAL_POSITION_INT];
if (bytearray != null)
{
var loc = bytearray.ByteArrayToStructure<MAVLink.mavlink_global_position_int_t>(6);
// the new arhs deadreckoning may send 0 alt and 0 long. check for and undo
alt = loc.relative_alt / 1000.0f;
useLocation = true;
if (loc.lat == 0 && loc.lon == 0)
{
useLocation = false;
}
else
{
lat = loc.lat / 10000000.0f;
lng = loc.lon / 10000000.0f;
}
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.MISSION_CURRENT];
if (bytearray != null)
{
var wpcur = bytearray.ByteArrayToStructure<MAVLink.mavlink_mission_current_t>(6);
int oldwp = (int)wpno;
wpno = wpcur.seq;
if (oldwp != wpno && MainV2.speechEnable && MainV2.getConfig("speechwaypointenabled") == "True")
{
MainV2.speechEngine.SpeakAsync(Common.speechConversion(MainV2.getConfig("speechwaypoint")));
}
//MAVLink.packets[(byte)MAVLink.MSG_NAMES.WAYPOINT_CURRENT] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.NAV_CONTROLLER_OUTPUT];
if (bytearray != null)
{
var nav = bytearray.ByteArrayToStructure<MAVLink.mavlink_nav_controller_output_t>(6);
nav_roll = nav.nav_roll;
nav_pitch = nav.nav_pitch;
nav_bearing = nav.nav_bearing;
target_bearing = nav.target_bearing;
wp_dist = nav.wp_dist;
alt_error = nav.alt_error;
aspd_error = nav.aspd_error / 100.0f;
xtrack_error = nav.xtrack_error;
//MAVLink.packets[(byte)MAVLink.MSG_NAMES.NAV_CONTROLLER_OUTPUT] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.RC_CHANNELS_RAW];
if (bytearray != null)
{
var rcin = bytearray.ByteArrayToStructure<MAVLink.mavlink_rc_channels_raw_t>(6);
ch1in = rcin.chan1_raw;
ch2in = rcin.chan2_raw;
ch3in = rcin.chan3_raw;
ch4in = rcin.chan4_raw;
ch5in = rcin.chan5_raw;
ch6in = rcin.chan6_raw;
ch7in = rcin.chan7_raw;
ch8in = rcin.chan8_raw;
//percent
rxrssi = (float)((rcin.rssi / 255.0) * 100.0);
//MAVLink.packets[(byte)MAVLink.MSG_NAMES.RC_CHANNELS_RAW] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.SERVO_OUTPUT_RAW];
if (bytearray != null)
{
var servoout = bytearray.ByteArrayToStructure<MAVLink.mavlink_servo_output_raw_t>(6);
ch1out = servoout.servo1_raw;
ch2out = servoout.servo2_raw;
ch3out = servoout.servo3_raw;
ch4out = servoout.servo4_raw;
ch5out = servoout.servo5_raw;
ch6out = servoout.servo6_raw;
ch7out = servoout.servo7_raw;
ch8out = servoout.servo8_raw;
mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.SERVO_OUTPUT_RAW] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.RAW_IMU];
if (bytearray != null)
{
var imu = bytearray.ByteArrayToStructure<MAVLink.mavlink_raw_imu_t>(6);
gx = imu.xgyro;
gy = imu.ygyro;
gz = imu.zgyro;
ax = imu.xacc;
ay = imu.yacc;
az = imu.zacc;
mx = imu.xmag;
my = imu.ymag;
mz = imu.zmag;
//MAVLink.packets[(byte)MAVLink.MSG_NAMES.RAW_IMU] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.SCALED_IMU];
if (bytearray != null)
{
var imu = bytearray.ByteArrayToStructure<MAVLink.mavlink_scaled_imu_t>(6);
gx = imu.xgyro;
gy = imu.ygyro;
gz = imu.zgyro;
ax = imu.xacc;
ay = imu.yacc;
az = imu.zacc;
//MAVLink.packets[(byte)MAVLink.MSG_NAMES.RAW_IMU] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.VFR_HUD];
if (bytearray != null)
{
var vfr = bytearray.ByteArrayToStructure<MAVLink.mavlink_vfr_hud_t>(6);
//groundspeed = vfr.groundspeed;
airspeed = vfr.airspeed;
//alt = vfr.alt; // this might include baro
ch3percent = vfr.throttle;
//Console.WriteLine(alt);
//climbrate = vfr.climb;
//MAVLink.packets[(byte)MAVLink.MSG_NAMES.VFR_HUD] = null;
}
bytearray = mavinterface.MAV.packets[(byte)MAVLink.MAVLINK_MSG_ID.MEMINFO];
if (bytearray != null)
{
var mem = bytearray.ByteArrayToStructure<MAVLink.mavlink_meminfo_t>(6);
freemem = mem.freemem;
brklevel = mem.brkval;
}
}
//Console.Write(DateTime.Now.Millisecond + " start ");
// update form
try
{
if (bs != null)
{
if (bs.Count > 200)
{
while (bs.Count > 3)
bs.RemoveAt(1);
//bs.Clear();
}
bs.Add(this);
return;
bs.DataSource = this;
bs.ResetBindings(false);
return;
hires.Stopwatch sw = new hires.Stopwatch();
sw.Start();
bs.DataSource = this;
bs.ResetBindings(false);
sw.Stop();
var elaps = sw.Elapsed;
Console.WriteLine("1 " + elaps.ToString("0.#####") + " done ");
sw.Start();
bs.SuspendBinding();
bs.Clear();
bs.ResumeBinding();
bs.Add(this);
sw.Stop();
elaps = sw.Elapsed;
Console.WriteLine("2 " + elaps.ToString("0.#####") + " done ");
sw.Start();
if (bs.Count > 100)
bs.Clear();
bs.Add(this);
sw.Stop();
elaps = sw.Elapsed;
Console.WriteLine("3 " + elaps.ToString("0.#####") + " done ");
}
}
catch { log.InfoFormat("CurrentState Binding error"); }
}
}
private int MathParserLogic(System.Collections.Generic.List<string> _tokens)
{
// CALCULATING THE EXPRESSIONS INSIDE THE BRACKETS
// IF NEEDED, EXECUTE A FUNCTION
while (_tokens.IndexOf("(") != -1)
{
// getting data between "(", ")"
int open = _tokens.LastIndexOf("(");
int close = _tokens.IndexOf(")", open); // in case open is -1, i.e. no "(" // , open == 0 ? 0 : open - 1
if (open >= close)
{
// if there is no closing bracket, throw a new exception
throw new ArithmeticException("No closing bracket/parenthesis! tkn: " + open);
}
var roughExpr = new System.Collections.Generic.List<string>();
for (int i = open + 1; i < close; i++)
{
roughExpr.Add(_tokens[i]);
}
int result; // the temporary result is stored here
string functioName = _tokens[open == 0 ? 0 : open - 1];
var _args = new int[0];
if (this.LocalFunctions.Keys.Contains(functioName))
{
if (roughExpr.Contains(","))
{
// converting all arguments into a int array
for (int i = 0; i < roughExpr.Count; i++)
{
int firstCommaOrEndOfExpression = roughExpr.IndexOf(",", i) != -1
? roughExpr.IndexOf(",", i)
: roughExpr.Count;
var defaultExpr = new System.Collections.Generic.List<string>();
while (i < firstCommaOrEndOfExpression)
{
defaultExpr.Add(roughExpr[i]);
i++;
}
// changing the size of the array of arguments
Array.Resize(ref _args, _args.Length + 1);
if (defaultExpr.Count == 0)
{
_args[_args.Length - 1] = 0;
}
else
{
_args[_args.Length - 1] = this.BasicArithmeticalExpression(defaultExpr);
}
}
// finnaly, passing the arguments to the given function
result = int.Parse(
this.LocalFunctions[functioName](_args).ToString(this.CULTURE_INFO),
this.CULTURE_INFO);
}
else
{
// but if we only have one argument, then we pass it directly to the function
result =
int.Parse(
this.LocalFunctions[functioName](new[] { this.BasicArithmeticalExpression(roughExpr) })
.ToString(this.CULTURE_INFO),
this.CULTURE_INFO);
}
}
else
{
// if no function is need to execute following expression, pass it
// to the "BasicArithmeticalExpression" method.
result = this.BasicArithmeticalExpression(roughExpr);
}
// when all the calculations have been done
// we replace the "opening bracket with the result"
// and removing the rest.
_tokens[open] = result.ToString(this.CULTURE_INFO);
_tokens.RemoveRange(open + 1, close - open);
if (this.LocalFunctions.Keys.Contains(functioName))
{
// if we also executed a function, removing
// the function name as well.
_tokens.RemoveAt(open - 1);
}
}
// at this point, we should have replaced all brackets
// with the appropriate values, so we can simply
// calculate the expression. it's not so complex
// any more!
return this.BasicArithmeticalExpression(_tokens);
}
/*
* Release connections acquired by following referrals
*
* @param list the list of the connections
*/
/* package */
internal virtual void releaseReferralConnections(System.Collections.ArrayList list)
{
if (list == null)
{
return ;
}
// Release referral connections
for (int i = list.Count - 1; i >= 0; i--)
{
LdapConnection rconn = null;
try
{
rconn=(LdapConnection)list[i];
list.RemoveAt(i);
// rconn = (LdapConnection) list.RemoveAt(i);
rconn.Disconnect();
}
catch (System.IndexOutOfRangeException ex)
{
continue;
}
catch (LdapException lex)
{
continue;
}
}
return ;
}
private void EliminarRegistrosConDuracionMenorAUmbral(System.Collections.Generic.List<ReportElement> lista)
{
System.Collections.Generic.List<int> IDsARemover = new List<int>();
for (int i = 0; i < lista.Count; i++)
{
ReportElement rpt = lista[i];
int Umbral = int.MaxValue;
switch (rpt.EstadoInterno)
{
case ReportElement.EstadosPosibles.Carga:
Umbral = UmbralCarga;
break;
case ReportElement.EstadosPosibles.Detenido:
Umbral = UmbralDetenido;
break;
case ReportElement.EstadosPosibles.Transito:
Umbral = UmbralTransito;
break;
default:
break;
}
if (rpt.Duracion.Value < Umbral)
{
IDsARemover.Add(i);
if (i > 0)
lista[i - 1].Finalizar(rpt.DIA_HORA_Final);
}
}
for (int i = IDsARemover.Count - 1; i >= 0; i--)
{
lista.RemoveAt(IDsARemover[i]);
}
}
public void LoadFromIntList(System.Collections.Generic.List<int> list, bool[] arrayOfTypes)
{
if (list[0] != -1) //if solid node
{
type = list[0];
exists = arrayOfTypes[type];
list.RemoveAt(0);
}
else
{
list.RemoveAt(0);
nodes = new VoxelOctNode[8];
for (int n=0;n<8;n++)
{
nodes[n] = new VoxelOctNode();
nodes[n].LoadFromIntList(list, arrayOfTypes);
}
}
}
private static void deepToString(System.Object[] a, System.Text.StringBuilder buf, System.Collections.IList seen)
{
seen.Add(a);
buf.Append('[');
for (int i = 0; i < a.Length; i++)
{
if (i > 0)
buf.Append(", ");
System.Object e = a[i];
if (e == null)
{
buf.Append("null");
}
else if (!e.GetType().IsArray)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Object.toString' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
buf.Append(e.ToString());
}
else if (e is System.Object[])
{
if (seen.Contains(e))
buf.Append("[...]");
else
deepToString((System.Object[])e, buf, seen);
}
else
{
// primitive arr
buf.Append((e is sbyte[]) ? toString((sbyte[])e) : ((e is short[]) ? toString((short[])e) : ((e is int[]) ? toString((int[])e) : ((e is long[]) ? toString((long[])e) : ((e is char[]) ? toString((char[])e) : ((e is bool[]) ? toString((bool[])e) : ((e is float[]) ? toString((float[])e) : ((e is double[]) ? toString((double[])e) : ""))))))));
}
}
buf.Append(']');
seen.RemoveAt(seen.Count - 1);
}
/// <summary> Parse a branch
///
/// </summary>
/// <param name="v"> Description of Parameter
/// </param>
/// <param name="buffer"> Description of Parameter
/// </param>
/// <param name="container"> Description of Parameter
/// </param>
/// <param name="parent"> Description of Parameter
/// </param>
/// <param name="chiral"> Description of Parameter
/// </param>
/// <param name="doubleBondConfiguration"> Description of Parameter
/// </param>
/// <param name="atomsInOrderOfSmiles"> Description of Parameter
/// </param>
private void parseChain(System.Collections.ArrayList v, System.Text.StringBuilder buffer, IAtomContainer container, IAtom parent, bool chiral, bool[] doubleBondConfiguration, System.Collections.ArrayList atomsInOrderOfSmiles)
{
int positionInVector = 0;
IAtom atom;
//System.out.println("in parse chain. Size of tree: " + v.size());
for (int h = 0; h < v.Count; h++)
{
System.Object o = v[h];
if (o is IAtom)
{
atom = (IAtom)o;
if (parent != null)
{
parseBond(buffer, atom, parent, container);
}
else
{
if (chiral && BondTools.isStereo(container, atom))
{
parent = (IAtom)((System.Collections.ArrayList)v[1])[0];
}
}
parseAtom(atom, buffer, container, chiral, doubleBondConfiguration, parent, atomsInOrderOfSmiles, v);
//System.out.println("in parseChain after parseAtom()");
/*
* The principle of making chiral smiles is quite simple, although the code is
* pretty uggly. The Atoms connected to the chiral center are put in sorted[] in the
* order they have to appear in the smiles. Then the Vector v is rearranged according
* to sorted[]
*/
if (chiral && BondTools.isStereo(container, atom) && container.getBond(parent, atom) != null)
{
//System.out.println("in parseChain in isChiral");
IAtom[] sorted = null;
System.Collections.IList chiralNeighbours = container.getConnectedAtomsVector(atom);
if (BondTools.isTetrahedral(container, atom, false) > 0)
{
sorted = new IAtom[3];
}
if (BondTools.isTetrahedral(container, atom, false) == 1)
{
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0 && BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0 && !BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
}
}
}
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0 && BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0 && !BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
}
}
}
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_UNDEFINED || container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_NONE)
{
bool normalBindingIsLeft = false;
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0)
{
if (BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom))
{
normalBindingIsLeft = true;
break;
}
}
}
}
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (normalBindingIsLeft)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0)
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
}
else
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0)
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
}
}
}
}
}
if (BondTools.isTetrahedral(container, atom, false) == 2)
{
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN && BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN && !BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
}
}
}
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
double angle1 = 0;
double angle2 = 0;
IAtom atom1 = null;
IAtom atom2 = null;
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
if (angle1 == 0)
{
angle1 = BondTools.giveAngle(atom, parent, (IAtom)chiralNeighbours[i]);
atom1 = (IAtom)chiralNeighbours[i];
}
else
{
angle2 = BondTools.giveAngle(atom, parent, (IAtom)chiralNeighbours[i]);
atom2 = (IAtom)chiralNeighbours[i];
}
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
}
}
if (angle1 < angle2)
{
sorted[0] = atom2;
sorted[2] = atom1;
}
else
{
sorted[0] = atom1;
sorted[2] = atom2;
}
}
}
if (BondTools.isTetrahedral(container, atom, false) == 3)
{
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
//UPGRADE_ISSUE: Class hierarchy differences between 'java.util.TreeMap' and 'System.Collections.SortedList' may cause compilation errors. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1186'"
//UPGRADE_TODO: Constructor 'java.util.TreeMap.TreeMap' was converted to 'System.Collections.SortedList' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilTreeMapTreeMap'"
System.Collections.SortedList hm = new System.Collections.SortedList();
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
hm[(double)BondTools.giveAngle(atom, parent, ((IAtom)chiralNeighbours[i]))] = (System.Int32)i;
}
}
//UPGRADE_TODO: Method 'java.util.TreeMap.values' was converted to 'System.Collections.SortedList.Values' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilTreeMapvalues'"
System.Object[] ohere = SupportClass.ICollectionSupport.ToArray(hm.Values);
for (int i = ohere.Length - 1; i > -1; i--)
{
sorted[i] = ((IAtom)chiralNeighbours[((System.Int32)ohere[i])]);
}
}
if (container.getBond(parent, atom).Stereo == 0)
{
double angle1 = 0;
double angle2 = 0;
IAtom atom1 = null;
IAtom atom2 = null;
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0 && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
if (angle1 == 0)
{
angle1 = BondTools.giveAngle(atom, parent, (IAtom)chiralNeighbours[i]);
atom1 = (IAtom)chiralNeighbours[i];
}
else
{
angle2 = BondTools.giveAngle(atom, parent, (IAtom)chiralNeighbours[i]);
atom2 = (IAtom)chiralNeighbours[i];
}
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
}
}
if (angle1 < angle2)
{
sorted[1] = atom2;
sorted[2] = atom1;
}
else
{
sorted[1] = atom1;
sorted[2] = atom2;
}
}
}
if (BondTools.isTetrahedral(container, atom, false) == 4)
{
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
//UPGRADE_ISSUE: Class hierarchy differences between 'java.util.TreeMap' and 'System.Collections.SortedList' may cause compilation errors. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1186'"
//UPGRADE_TODO: Constructor 'java.util.TreeMap.TreeMap' was converted to 'System.Collections.SortedList' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilTreeMapTreeMap'"
System.Collections.SortedList hm = new System.Collections.SortedList();
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
hm[(double)BondTools.giveAngle(atom, parent, ((IAtom)chiralNeighbours[i]))] = (System.Int32)i;
}
}
//UPGRADE_TODO: Method 'java.util.TreeMap.values' was converted to 'System.Collections.SortedList.Values' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilTreeMapvalues'"
System.Object[] ohere = SupportClass.ICollectionSupport.ToArray(hm.Values);
for (int i = ohere.Length - 1; i > -1; i--)
{
sorted[i] = ((IAtom)chiralNeighbours[((System.Int32)ohere[i])]);
}
}
if (container.getBond(parent, atom).Stereo == 0)
{
double angle1 = 0;
double angle2 = 0;
IAtom atom1 = null;
IAtom atom2 = null;
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0 && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
if (angle1 == 0)
{
angle1 = BondTools.giveAngle(atom, parent, (IAtom)chiralNeighbours[i]);
atom1 = (IAtom)chiralNeighbours[i];
}
else
{
angle2 = BondTools.giveAngle(atom, parent, (IAtom)chiralNeighbours[i]);
atom2 = (IAtom)chiralNeighbours[i];
}
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
}
}
if (angle1 < angle2)
{
sorted[1] = atom2;
sorted[0] = atom1;
}
else
{
sorted[1] = atom1;
sorted[0] = atom2;
}
}
}
if (BondTools.isTetrahedral(container, atom, false) == 5)
{
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0)
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
}
}
}
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN && BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN && !BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0)
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
}
}
}
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_UNDEFINED || container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_NONE)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN && BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN && !BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
}
}
}
}
if (BondTools.isTetrahedral(container, atom, false) == 6)
{
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0)
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
}
}
}
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP && BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP && !BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == 0)
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
}
}
}
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_UNDEFINED || container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_NONE)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP && BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[2] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_UP && !BondTools.isLeft(((IAtom)chiralNeighbours[i]), parent, atom) && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
if (container.getBond((IAtom)chiralNeighbours[i], atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
sorted[1] = (IAtom)chiralNeighbours[i];
}
}
}
}
}
if (BondTools.isSquarePlanar(container, atom))
{
sorted = new IAtom[3];
//This produces a U=SP1 order in every case
//UPGRADE_ISSUE: Class hierarchy differences between 'java.util.TreeMap' and 'System.Collections.SortedList' may cause compilation errors. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1186'"
//UPGRADE_TODO: Constructor 'java.util.TreeMap.TreeMap' was converted to 'System.Collections.SortedList' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilTreeMapTreeMap'"
System.Collections.SortedList hm = new System.Collections.SortedList();
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent && !isBondBroken((IAtom)chiralNeighbours[i], atom))
{
hm[(double)BondTools.giveAngle(atom, parent, ((IAtom)chiralNeighbours[i]))] = (System.Int32)i;
}
}
//UPGRADE_TODO: Method 'java.util.TreeMap.values' was converted to 'System.Collections.SortedList.Values' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilTreeMapvalues'"
System.Object[] ohere = SupportClass.ICollectionSupport.ToArray(hm.Values);
for (int i = 0; i < ohere.Length; i++)
{
sorted[i] = ((IAtom)chiralNeighbours[((System.Int32)ohere[i])]);
}
}
if (BondTools.isTrigonalBipyramidalOrOctahedral(container, atom) != 0)
{
sorted = new IAtom[container.getConnectedAtoms(atom).Length - 1];
//UPGRADE_ISSUE: Class hierarchy differences between 'java.util.TreeMap' and 'System.Collections.SortedList' may cause compilation errors. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1186'"
//UPGRADE_TODO: Constructor 'java.util.TreeMap.TreeMap' was converted to 'System.Collections.SortedList' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilTreeMapTreeMap'"
System.Collections.SortedList hm = new System.Collections.SortedList();
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_UP)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (container.getBond(atom, (IAtom)chiralNeighbours[i]).Stereo == 0)
{
hm[(double)BondTools.giveAngle(atom, parent, ((IAtom)chiralNeighbours[i]))] = (System.Int32)i;
}
if (container.getBond(atom, (IAtom)chiralNeighbours[i]).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
sorted[sorted.Length - 1] = (IAtom)chiralNeighbours[i];
}
}
//UPGRADE_TODO: Method 'java.util.TreeMap.values' was converted to 'System.Collections.SortedList.Values' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilTreeMapvalues'"
System.Object[] ohere = SupportClass.ICollectionSupport.ToArray(hm.Values);
for (int i = 0; i < ohere.Length; i++)
{
sorted[i] = ((IAtom)chiralNeighbours[((System.Int32)ohere[i])]);
}
}
if (container.getBond(parent, atom).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (container.getBond(atom, (IAtom)chiralNeighbours[i]).Stereo == 0)
{
hm[(double)BondTools.giveAngle(atom, parent, ((IAtom)chiralNeighbours[i]))] = (System.Int32)i;
}
if (container.getBond(atom, (IAtom)chiralNeighbours[i]).Stereo == CDKConstants.STEREO_BOND_UP)
{
sorted[sorted.Length - 1] = (IAtom)chiralNeighbours[i];
}
}
//UPGRADE_TODO: Method 'java.util.TreeMap.values' was converted to 'System.Collections.SortedList.Values' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilTreeMapvalues'"
System.Object[] ohere = SupportClass.ICollectionSupport.ToArray(hm.Values);
for (int i = 0; i < ohere.Length; i++)
{
sorted[i] = ((IAtom)chiralNeighbours[((System.Int32)ohere[i])]);
}
}
if (container.getBond(parent, atom).Stereo == 0)
{
for (int i = 0; i < chiralNeighbours.Count; i++)
{
if (chiralNeighbours[i] != parent)
{
if (container.getBond(atom, (IAtom)chiralNeighbours[i]).Stereo == 0)
{
hm[(double)(BondTools.giveAngleFromMiddle(atom, parent, ((IAtom)chiralNeighbours[i])))] = (System.Int32)i;
}
if (container.getBond(atom, (IAtom)chiralNeighbours[i]).Stereo == CDKConstants.STEREO_BOND_UP)
{
sorted[0] = (IAtom)chiralNeighbours[i];
}
if (container.getBond(atom, (IAtom)chiralNeighbours[i]).Stereo == CDKConstants.STEREO_BOND_DOWN)
{
sorted[sorted.Length - 2] = (IAtom)chiralNeighbours[i];
}
}
}
//UPGRADE_TODO: Method 'java.util.TreeMap.values' was converted to 'System.Collections.SortedList.Values' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilTreeMapvalues'"
System.Object[] ohere = SupportClass.ICollectionSupport.ToArray(hm.Values);
sorted[sorted.Length - 1] = ((IAtom)chiralNeighbours[((System.Int32)ohere[ohere.Length - 1])]);
if (ohere.Length == 2)
{
sorted[sorted.Length - 3] = ((IAtom)chiralNeighbours[((System.Int32)ohere[0])]);
if (BondTools.giveAngleFromMiddle(atom, parent, ((IAtom)chiralNeighbours[((System.Int32)ohere[1])])) < 0)
{
IAtom dummy = sorted[sorted.Length - 2];
sorted[sorted.Length - 2] = sorted[0];
sorted[0] = dummy;
}
}
if (ohere.Length == 3)
{
sorted[sorted.Length - 3] = sorted[sorted.Length - 2];
sorted[sorted.Length - 2] = ((IAtom)chiralNeighbours[((System.Int32)ohere[ohere.Length - 2])]);
sorted[sorted.Length - 4] = ((IAtom)chiralNeighbours[((System.Int32)ohere[ohere.Length - 3])]);
}
}
}
//This builds an onew[] containing the objects after the center of the chirality in the order given by sorted[]
if (sorted != null)
{
int numberOfAtoms = 3;
if (BondTools.isTrigonalBipyramidalOrOctahedral(container, atom) != 0)
{
numberOfAtoms = container.getConnectedAtoms(atom).Length - 1;
}
System.Object[] omy = new System.Object[numberOfAtoms];
System.Object[] onew = new System.Object[numberOfAtoms];
for (int k = getRingOpenings(atom, null).Count; k < numberOfAtoms; k++)
{
if (positionInVector + 1 + k - getRingOpenings(atom, null).Count < v.Count)
{
omy[k] = v[positionInVector + 1 + k - getRingOpenings(atom, null).Count];
}
}
for (int k = 0; k < sorted.Length; k++)
{
if (sorted[k] != null)
{
for (int m = 0; m < omy.Length; m++)
{
if (omy[m] is IAtom)
{
if (omy[m] == sorted[k])
{
onew[k] = omy[m];
}
}
else
{
if (omy[m] == null)
{
onew[k] = null;
}
else
{
if (((System.Collections.ArrayList)omy[m])[0] == sorted[k])
{
onew[k] = omy[m];
}
}
}
}
}
else
{
onew[k] = null;
}
}
//This is a workaround for 3624.MOL.2 I don't have a better solution currently
bool doubleentry = false;
for (int m = 0; m < onew.Length; m++)
{
for (int k = 0; k < onew.Length; k++)
{
if (m != k && onew[k] == onew[m])
{
doubleentry = true;
}
}
}
if (!doubleentry)
{
//Make sure that the first atom in onew is the first one in the original smiles order. This is important to have a canonical smiles.
if (positionInVector + 1 < v.Count)
{
System.Object atomAfterCenterInOriginalSmiles = v[positionInVector + 1];
int l = 0;
while (onew[0] != atomAfterCenterInOriginalSmiles)
{
System.Object placeholder = onew[onew.Length - 1];
for (int k = onew.Length - 2; k > -1; k--)
{
onew[k + 1] = onew[k];
}
onew[0] = placeholder;
l++;
if (l > onew.Length)
{
break;
}
}
}
//This cares about ring openings. Here the ring closure (represendted by a figure) must be the first atom. In onew the closure is null.
if (getRingOpenings(atom, null).Count > 0)
{
int l = 0;
while (onew[0] != null)
{
System.Object placeholder = onew[0];
for (int k = 1; k < onew.Length; k++)
{
onew[k - 1] = onew[k];
}
onew[onew.Length - 1] = placeholder;
l++;
if (l > onew.Length)
{
break;
}
}
}
//The last in onew is a vector: This means we need to exchange the rest of the original smiles with the rest of this vector.
if (onew[numberOfAtoms - 1] is System.Collections.ArrayList)
{
for (int i = 0; i < numberOfAtoms; i++)
{
if (onew[i] is IAtom)
{
System.Collections.ArrayList vtemp = System.Collections.ArrayList.Synchronized(new System.Collections.ArrayList(10));
vtemp.Add(onew[i]);
for (int k = positionInVector + 1 + numberOfAtoms; k < v.Count; k++)
{
vtemp.Add(v[k]);
}
onew[i] = vtemp;
for (int k = v.Count - 1; k > positionInVector + 1 + numberOfAtoms - 1; k--)
{
v.RemoveAt(k);
}
for (int k = 1; k < ((System.Collections.ArrayList)onew[numberOfAtoms - 1]).Count; k++)
{
v.Add(((System.Collections.ArrayList)onew[numberOfAtoms - 1])[k]);
}
onew[numberOfAtoms - 1] = ((System.Collections.ArrayList)onew[numberOfAtoms - 1])[0];
break;
}
}
}
//Put the onew objects in the original Vector
int k2 = 0;
for (int m = 0; m < onew.Length; m++)
{
if (onew[m] != null)
{
v[positionInVector + 1 + k2] = onew[m];
k2++;
}
}
}
}
}
parent = atom;
}
else
{
//Have Vector
//System.out.println("in parseChain after else");
bool brackets = true;
System.Collections.ArrayList result = System.Collections.ArrayList.Synchronized(new System.Collections.ArrayList(10));
addAtoms((System.Collections.ArrayList)o, result);
if (isRingOpening(parent, result) && container.getBondCount(parent) < 4)
{
brackets = false;
}
if (brackets)
{
buffer.Append('(');
}
parseChain((System.Collections.ArrayList)o, buffer, container, parent, chiral, doubleBondConfiguration, atomsInOrderOfSmiles);
if (brackets)
{
buffer.Append(')');
}
}
positionInVector++;
//System.out.println("in parseChain after positionVector++");
}
}
// use selection sort to return a sort list of the pull forces
// sorted from smallest to largest
System.Collections.Generic.List<PullForce> sortForces(System.Collections.Generic.List<PullForce> a)
{
//remove any null entries
for(int k = 0; k< a.Count; k++)
{
if(a[k].force == new Vector3(float.MaxValue, float.MaxValue, float.MaxValue))
{
a.RemoveAt(k);
k--;
}
}
//sort list
int i,j;
int iMin;
for (j = 0; j < a.Count - 1; j++) {
iMin = j;
for ( i = j+1; i < a.Count; i++) {
if (a[i].dist < a[iMin].dist) {
iMin = i;
}
}
if ( iMin != j ) {
PullForce temp = a[j];
a[j] = a[iMin];
a[iMin] = temp;
}
}
return a;
}
private void MapSubclasses(System.Collections.ArrayList subclasses, System.Collections.Specialized.StringCollection extendedClassesNames, System.Collections.ArrayList mappedClassesNames, System.Xml.XmlTextWriter writer)
{
System.Collections.ArrayList mappedSubclassesNames = new System.Collections.ArrayList();
// Map each subclass after the class it extends
while(subclasses.Count > 0)
for(int i=subclasses.Count-1; i>=0; i--)
{
System.Type type = subclasses[i] as System.Type;
string extendedClassName = extendedClassesNames[i];
if(extendedClassName==null)
throw new MappingException("You must specify the Extends attribute of the Subclass: " + type.FullName);
if( ! mappedClassesNames.Contains(extendedClassName)
&& ! mappedSubclassesNames.Contains(extendedClassName) )
{
bool extendedClassFoundButNotMappedYet = false;
// Make sure that the extended class is mapped (in this assembly)
foreach(System.Type subclass in subclasses)
{
if( HbmWriterHelper.GetNameWithAssembly(subclass)
== extendedClassName )
{
if(subclass==type)
throw new MappingException("The Subclass " + type.FullName + " extends itself.");
else
{
extendedClassFoundButNotMappedYet = true;
break;
}
}
}
if (extendedClassFoundButNotMappedYet)
continue; // Map this one later
// Else unknown extended class:
// Assume it is mapped somewhere else and map this subclass
}
if( IsSubclass(type, typeof(SubclassAttribute)) )
HbmWriter.WriteSubclass(writer, type);
else if( IsSubclass(type, typeof(JoinedSubclassAttribute)) )
HbmWriter.WriteJoinedSubclass(writer, type);
else if( IsSubclass(type, typeof(UnionSubclassAttribute)) )
HbmWriter.WriteUnionSubclass(writer, type);
// Note: Do not add to mappedClassesNames because it is for x-subclasses (and a x-subclasses shouldn't extend another x-subclasses)
mappedSubclassesNames.Add(HbmWriterHelper.GetNameWithAssembly(type));
subclasses.RemoveAt(i);
extendedClassesNames.RemoveAt(i);
}
}
/// <summary>
///
/// </summary>
/// <param name="curve"></param>
/// <param name="barType"></param>
/// <param name="barStyle"></param>
/// <param name="host"></param>
/// <param name="startHook"></param>
/// <param name="endHook"></param>
/// <param name="startHookOrientation"></param>
/// <param name="endHookOrientation"></param>
/// <param name="normal"></param>
/// <param name="useExistingShape"></param>
/// <param name="createNewShape"></param>
private void InitRebarContainer(System.Collections.Generic.List<object> curves,
Autodesk.Revit.DB.Structure.RebarBarType barType,
Autodesk.Revit.DB.Structure.RebarStyle barStyle,
Autodesk.Revit.DB.Element host,
Autodesk.Revit.DB.Structure.RebarHookType startHook,
Autodesk.Revit.DB.Structure.RebarHookType endHook,
Autodesk.Revit.DB.Structure.RebarHookOrientation startHookOrientation,
Autodesk.Revit.DB.Structure.RebarHookOrientation endHookOrientation,
System.Collections.Generic.List<Autodesk.Revit.DB.XYZ> normals,
bool useExistingShape,
bool createNewShape)
{
Autodesk.Revit.DB.Document document = DocumentManager.Instance.CurrentDBDocument;
TransactionManager.Instance.EnsureInTransaction(document);
var rebarElem = ElementBinder.GetElementFromTrace<Autodesk.Revit.DB.Structure.RebarContainer>(document);
// Parse Geometry
List<List<Curve>> curvature = new List<List<Curve>>();
foreach (object curve in curves)
{
List<Curve> geometry = new List<Curve>();
if (curve.GetType() == typeof(DynamoRebar.RevitPolyCurve))
{
DynamoRebar.RevitPolyCurve polycurve = (DynamoRebar.RevitPolyCurve)curve;
geometry = polycurve.Curves;
}
else
geometry.Add((Curve)curve);
curvature.Add(geometry);
}
if (rebarElem == null)
{
ElementId stdC = Autodesk.Revit.DB.Structure.RebarContainerType.CreateDefaultRebarContainerType(DocumentManager.Instance.CurrentDBDocument);
rebarElem = Autodesk.Revit.DB.Structure.RebarContainer.Create(DocumentManager.Instance.CurrentDBDocument, host, stdC);
}
else
{
//rebarElem.ClearItems();
rebarElem.SetHostId(document, host.Id);
}
int counter = rebarElem.ItemsCount;
for (int i = 0; i < counter; i++)
{
Autodesk.Revit.DB.Structure.RebarContainerItem item = rebarElem.GetItem(i);
int index = GeometryMatches(item.ComputeDrivingCurves(), curvature);
if (index == -1)
rebarElem.RemoveItem(item);
else
{
item.SetHookOrientation(0, startHookOrientation);
item.SetHookOrientation(1, endHookOrientation);
item.SetHookTypeId(0, startHook.Id);
item.SetHookTypeId(1, endHook.Id);
curvature.RemoveAt(index);
if (normals.Count > 1) normals.RemoveAt(index);
}
}
for (int i = 0; i < curvature.Count; i++)
{
// If there is only one normal in the list use this one for all curves
XYZ normal = (normals.Count == 1) ? normals[0] : normals[i];
List<Curve> geometry = curvature[i];
rebarElem.AppendItemFromCurves(barStyle, barType, startHook, endHook, normal, geometry, startHookOrientation, endHookOrientation, useExistingShape, createNewShape);
}
// Update Quantity Parameter
Autodesk.Revit.DB.Parameter quantityParameter = rebarElem.get_Parameter(BuiltInParameter.REBAR_ELEM_QUANTITY_OF_BARS);
Autodesk.Revit.DB.Structure.RebarContainerParameterManager containerParameters = rebarElem.GetParametersManager();
containerParameters.AddOverride(quantityParameter.Id, curves.Count);
InternalSetRebarContainer(rebarElem);
TransactionManager.Instance.TransactionTaskDone();
if (rebarElem != null)
{
ElementBinder.CleanupAndSetElementForTrace(document, this.InternalElement);
}
else
{
ElementBinder.SetElementForTrace(this.InternalElement);
}
}
private void DeleteObjects(System.Collections.ArrayList objectNames, bool doingFiles)
{
// Indices of successfully deleted objects (so we can remove their names in reverse order)
System.Collections.ArrayList deletedIndices = new System.Collections.ArrayList(objectNames.Count);
int index = 0;
foreach (string objectName in objectNames)
{
bool exists = (doingFiles ? File.Exists(objectName) : Directory.Exists(objectName));
if (!exists)
{
// It's already gone: remove its name
deletedIndices.Insert(0, index);
}
else
{
try
{
if (doingFiles)
{
ForceDeleteFile(objectName);
}
else
{
// Delete the files in the directory
DirectoryInfo dirInfo = new DirectoryInfo(objectName);
foreach (FileInfo file in dirInfo.GetFiles())
{
ForceDeleteFile(file.FullName);
}
Directory.Delete(objectName);
}
deletedIndices.Insert(0, index);
}
catch
{
}
}
++index;
}
foreach (int i in deletedIndices)
{
objectNames.RemoveAt(i);
}
}
public void TrySCIList(System.Collections.IList list)
{
// Should be called with a C5.IList<B> which is not a WrappedArray
Assert.AreEqual(0, list.Count);
list.CopyTo(new A[0], 0);
list.CopyTo(new B[0], 0);
list.CopyTo(new C[0], 0);
Assert.IsTrue(!list.IsFixedSize);
Assert.IsFalse(list.IsReadOnly);
Assert.IsFalse(list.IsSynchronized);
Assert.AreNotEqual(null, list.SyncRoot);
Object b1 = new B(), b2 = new B(), c1 = new C(), c2 = new C();
Assert.AreEqual(0, list.Add(b1));
Assert.AreEqual(1, list.Add(c1));
Assert.AreEqual(2, list.Count);
Assert.IsTrue(list.Contains(c1));
Assert.IsFalse(list.Contains(b2));
list[0] = b2;
Assert.AreEqual(b2, list[0]);
list[1] = c2;
Assert.AreEqual(c2, list[1]);
Assert.IsTrue(list.Contains(b2));
Assert.IsTrue(list.Contains(c2));
Array arrA = new A[2], arrB = new B[2];
list.CopyTo(arrA, 0);
list.CopyTo(arrB, 0);
Assert.AreEqual(b2, arrA.GetValue(0));
Assert.AreEqual(b2, arrB.GetValue(0));
Assert.AreEqual(c2, arrA.GetValue(1));
Assert.AreEqual(c2, arrB.GetValue(1));
Assert.AreEqual(0, list.IndexOf(b2));
Assert.AreEqual(-1, list.IndexOf(b1));
list.Remove(b1);
list.Remove(b2);
Assert.IsFalse(list.Contains(b2));
Assert.AreEqual(1, list.Count); // Contains c2 only
list.Insert(0, b2);
list.Insert(2, b1);
Assert.AreEqual(b2, list[0]);
Assert.AreEqual(c2, list[1]);
Assert.AreEqual(b1, list[2]);
list.Remove(c2);
Assert.AreEqual(b2, list[0]);
Assert.AreEqual(b1, list[1]);
list.RemoveAt(1);
Assert.AreEqual(b2, list[0]);
list.Clear();
Assert.AreEqual(0, list.Count);
list.Remove(b1);
}
/// <summary>
/// Removes the element at the top of the stack and returns it.
/// </summary>
/// <param name="stack">The stack where the element at the top will be returned and removed.</param>
/// <returns>The element at the top of the stack.</returns>
public static System.Object Pop(System.Collections.ArrayList stack)
{
System.Object obj = stack[stack.Count - 1];
stack.RemoveAt(stack.Count - 1);
return obj;
}
public void IListRemoveAtWorks()
{
IList<string> l = new[] { "x", "y", "z" };
l.RemoveAt(1);
Assert.AreEqual(l, new[] { "x", "z" });
}
private static void findPathBetween(IAtomContainer atomContainer, IAtom start, IAtom end, System.Collections.IList path)
{
if (start == end)
{
path.Add(start);
allPaths.Add(new System.Collections.ArrayList(path));
path.RemoveAt(path.Count - 1);
return;
}
if (path.Contains(start))
return;
path.Add(start);
System.Collections.IList nbrs = atomContainer.getConnectedAtomsVector(start);
//UPGRADE_TODO: Method 'java.util.Iterator.hasNext' was converted to 'System.Collections.IEnumerator.MoveNext' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilIteratorhasNext'"
for (System.Collections.IEnumerator i = nbrs.GetEnumerator(); i.MoveNext(); )
{
//UPGRADE_TODO: Method 'java.util.Iterator.next' was converted to 'System.Collections.IEnumerator.Current' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilIteratornext'"
findPathBetween(atomContainer, (IAtom)i.Current, end, path);
}
path.RemoveAt(path.Count - 1);
}
