/// <summary>
/// This method wraps up the body of XML with the appropriate header and footer.
/// </summary>
/// <param name="mainPattern">The first pattern found in our pattern tree.</param>
/// <param name="DefinitionName">Name of definition we want this structure to be called.</param>
/// <returns></returns>
public static string BuildPatternXML(PatternBase mainPattern, string DefinitionName)
{
return
string.Format(PATTERN_XML_HEADER_FOOTER,
DefinitionName,
mainPattern.ElementXML());
}
private void CreatePattern(Type patternType, ParameterizableConfigurationElement patternConfiguration, Data.Matcher matcher)
{
PatternBase pattern = ConfigurableBase.CreateConfigurableItem <PatternBase>(patternType, patternConfiguration != null ? patternConfiguration.Parameters : null);
pattern.Configuration = ConfigurationFactory.GetConfiguration(patternConfiguration, matcher);
_patterns.Add(pattern);
}
/// <summary>
/// Re-initialize all components in this child UI.
/// This method also checks whether or not the selected pattern is a complex type.
/// If yes, the data form will render a special tag to accomodate the complex type settings.
/// </summary>
/// <param name="p">The selected Pattern</param>
public void RebuildPanel(PatternBase p)
{
this.PnlPatternSetter.CommandButtonsVisibility = DataFormCommandButtonsVisibility.Commit;
this.PnlPatternSetter.CurrentItem = p;
#region Checks whether the selected pattern is a complex type
#region if pattern is ["Position Weighted Matrix"]
if (p is PWM)
{
pcv = new PagedCollectionView((p as PWM).RowElements);
DataContext = pcv;
SubElementView.Header = "PWM row elements";
SubPanelDF.Header = "Add a PWM row here.";
}
#endregion
#region else if pattern is a ["Block"]
else if (p is BioPatMLEditor.PatternControls.PatternModels.Block)
{
pcv = new PagedCollectionView((p as BioPatMLEditor.PatternControls.PatternModels.Block).BlockElements);
DataContext = pcv;
SubPanelDF.Header = "Add your Block(s) here.";
SubElementView.Header = "Block sequences";
}
#endregion
#region else if pattern is a ["Composition"]
else if (p is Composition)
{
pcv = new PagedCollectionView((p as Composition).compElements);
DataContext = pcv;
SubPanelDF.Header = "Add your Symbol & Weight here.";
SubElementView.Header = "Symbol Weights";
}
#endregion
#region else if pattern is a ["Repeat"]
else if (p is Repeat)
{
pcv = new PagedCollectionView((p as Repeat).RepeatPairs);
DataContext = pcv;
SubElementView.Header = "Pairings";
SubPanelDF.Header = "Add your pairings here.";
}
#endregion
#region Otherwise just another ordinary pattern, not a complex one.
else
//Patterns with no sub elements
SubElementView.Visibility = System.Windows.Visibility.Collapsed;
#endregion
#endregion
}
internal PatternTestAdapter(NameValueCollection config, ResourceInformation input, List <FoundMatchBase> expectedOutput)
{
_pattern = Activator.CreateInstance <T>();
if (config != null)
{
NameValueConfigurationCollection properConfig = new NameValueConfigurationCollection();
foreach (string key in config.AllKeys)
{
properConfig.Add(new NameValueConfigurationElement(key, config[key]));
}
_pattern.Configure(properConfig);
}
_input = input;
_expectedOutput = expectedOutput;
}
/// <summary>
/// Re-initialize all components in this child UI.
/// This method also checks whether or not the selected pattern is a complex type.
/// If yes, the data form will render a special tag to accomodate the complex type settings.
/// </summary>
/// <param name="p">The selected Pattern</param>
public void RebuildPanel ( PatternBase p ) {
this.PnlPatternSetter.CommandButtonsVisibility = DataFormCommandButtonsVisibility.Commit;
this.PnlPatternSetter.CurrentItem = p;
MainView.IsSelected = true;
if ( p == null ) {
SubElementView.Visibility = System.Windows.Visibility.Collapsed;
}
else if ( p is PWM ) {
pcv = new PagedCollectionView( ( p as PWM ).RowElements );
DataContext = pcv;
SubElementView.Visibility = System.Windows.Visibility.Visible;
SubElementView.Header = "PWM row elements";
SubPanelDF.Header = "Add a PWM row here.";
}
else if ( p is BioPatMLEditor.PatternControls.PatternModels.Block ) {
pcv = new PagedCollectionView( ( p as BioPatMLEditor.PatternControls.PatternModels.Block ).children );
DataContext = pcv;
SubElementView.Visibility = System.Windows.Visibility.Visible;
SubPanelDF.Header = "Add your Block(s) here.";
SubElementView.Header = "Block sequences";
}
else if ( p is Composition ) {
pcv = new PagedCollectionView( ( p as Composition ).children );
DataContext = pcv;
SubElementView.Visibility = System.Windows.Visibility.Visible;
SubPanelDF.Header = "Add your Symbol & Weight here.";
SubElementView.Header = "Symbol Weights";
}
else if ( p is Repeat ) {
pcv = new PagedCollectionView( ( p as Repeat ).RepeatPairs );
DataContext = pcv;
SubElementView.Visibility = System.Windows.Visibility.Visible;
SubElementView.Header = "Pairings";
SubPanelDF.Header = "Add your pairings here.";
}
else {
//Patterns with no sub elements
SubElementView.Visibility = System.Windows.Visibility.Collapsed;
}
}
public static bool AreMacthesFound(
string input,
PatternBase pattern)
{
bool AreMatchesWithPattern = false;
switch (pattern.PatternType)
{
case PatternMatchType.StartsWith:
AreMatchesWithPattern = input.StartsWith(pattern.PatternText, StringComparison.InvariantCultureIgnoreCase);
break;
case PatternMatchType.RegEx:
AreMatchesWithPattern = Regex.IsMatch(input, pattern.PatternText);
break;
case PatternMatchType.PresentsAnywhere:
AreMatchesWithPattern = input.ToLower().IndexOf(pattern.PatternText.ToLower(), 0) >= 0;
break;
}
return(AreMatchesWithPattern);
}
