/// <inheritdoc/>
public NEATGenome Factor(EncogRandom rnd, NEATPopulation pop,
int inputCount, int outputCount,
double connectionDensity)
{
return(new NEATGenome(rnd, pop, inputCount, outputCount,
connectionDensity));
}
public DisplayBoxes(NEATPopulation thePopulation)
{
InitializeComponent();
testCase.InitTestCase(0);
this.pop = thePopulation;
Render();
}
/// <summary>
/// Construct an innovation list, that includes the initial innovations.
/// </summary>
/// <param name="population">The population to base this innovation list on.</param>
public NEATInnovationList(NEATPopulation population)
{
Population = population;
FindInnovation(Population.AssignGeneId()); // bias
// input neurons
for (int i = 0; i < Population.InputCount; i++)
{
FindInnovation(Population.AssignGeneId());
}
// output neurons
for (int i = 0; i < Population.OutputCount; i++)
{
FindInnovation(Population.AssignGeneId());
}
// connections
for (var fromId = 0; fromId < Population.InputCount + 1; fromId++)
{
for (var toId = 0; toId < Population.OutputCount; toId++)
{
FindInnovation(fromId, toId);
}
}
}
/// <summary>
/// Create a NEAT population.
/// </summary>
/// <param name="architecture">The architecture string to use.</param>
/// <param name="input">The input count.</param>
/// <param name="output">The output count.</param>
/// <returns>The population.</returns>
public IMLMethod Create(String architecture, int input,
int output)
{
if (input <= 0)
{
throw new EncogError("Must have at least one input for NEAT.");
}
if (output <= 0)
{
throw new EncogError("Must have at least one output for NEAT.");
}
IDictionary <String, String> args = ArchitectureParse.ParseParams(architecture);
ParamsHolder holder = new ParamsHolder(args);
int populationSize = holder.GetInt(
MLMethodFactory.PropertyPopulationSize, false, 1000);
int cycles = holder.GetInt(
MLMethodFactory.PropertyCycles, false, NEATPopulation.DefaultCycles);
IActivationFunction af = this.factory.Create(
holder.GetString(MLMethodFactory.PropertyAF, false, MLActivationFactory.AF_SSIGMOID));
NEATPopulation pop = new NEATPopulation(input, output, populationSize);
pop.Reset();
pop.ActivationCycles = cycles;
pop.NEATActivationFunction = af;
return(pop);
}
private void trainNetworkBackprop()
{
// IMLTrain train = new Backpropagation(this.network, this.input,this.ideal, 0.000001, 0.1);
IMLDataSet aset = new BasicMLDataSet(input, ideal);
int epoch = 1;
// train the neural network
ICalculateScore score = new TrainingSetScore(aset);
IMLTrain trainAlt = new NeuralSimulatedAnnealing(network, score, 10, 2, 100);
IMLTrain trainMain = new Backpropagation(network, aset, 0.001, 0.0);
StopTrainingStrategy stop = new StopTrainingStrategy();
var pop = new NEATPopulation(INPUT_SIZE, OUTPUT_SIZE, 1000);
// train the neural network
var step = new ActivationStep();
step.Center = 0.5;
pop.OutputActivationFunction = step;
var train = new NEATTraining(score, pop);
trainMain.AddStrategy(new Greedy());
trainMain.AddStrategy(new HybridStrategy(trainAlt));
trainMain.AddStrategy(stop);
trainMain.AddStrategy(new HybridStrategy(train));
network.ClearContext();
while (!stop.ShouldStop())
{
trainMain.Iteration();
train.Iteration();
Console.WriteLine(@"Training " + @"Epoch #" + epoch + @" Error:" + trainMain.Error + @" Genetic iteration:" + trainAlt.IterationNumber + @"neat iteration:" + train.IterationNumber);
epoch++;
}
}
/// <inheritdoc/>
public IMLMethod Decode(IGenome genome)
{
NEATPopulation pop = (NEATPopulation)genome.Population;
Substrate.Substrate substrate = pop.CurrentSubstrate;
return(Decode(pop, substrate, genome));
}
/// <summary>
/// Construct an innovation list, that includes the initial innovations.
/// </summary>
/// <param name="population">The population to base this innovation list on.</param>
public NEATInnovationList(NEATPopulation population)
{
Population = population;
FindInnovation(Population.AssignGeneId()); // bias
// input neurons
for (int i = 0; i < Population.InputCount; i++)
{
FindInnovation(Population.AssignGeneId());
}
// output neurons
for (int i = 0; i < Population.OutputCount; i++)
{
FindInnovation(Population.AssignGeneId());
}
// connections
for (var fromId = 0; fromId < Population.InputCount + 1; fromId++)
{
for (var toId = 0; toId < Population.OutputCount; toId++)
{
FindInnovation(fromId, toId);
}
}
}
static void Main(string[] args)
{
// this form of ANN uses genetic algorithm to produce
// hidden layer of neurons
// A NEAT network starts with only an
// input layer and output layer. The rest is evolved as the training progresses.
// Connections inside of a NEAT neural network can be feedforward, recurrent,
// or self - connected.All of these connection types will be tried by NEAT as it
// attempts to evolve a neural network capable of the given task.
IMLDataSet trainingSet = new BasicMLDataSet(XORInput, XORIdeal);
NEATPopulation pop = new NEATPopulation(2, 1, 1000);
pop.Reset();
pop.InitialConnectionDensity = 1.0; // not required, but speeds processing.
ICalculateScore score = new TrainingSetScore(trainingSet);
// train the neural network
TrainEA train = NEATUtil.ConstructNEATTrainer(pop, score);
EncogUtility.TrainToError(train, 0.01);
NEATNetwork network = (NEATNetwork)train.CODEC.Decode(train.BestGenome);
// TODO no persistance? no means to peek structure?
// test the neural network
Console.WriteLine(@"Neural Network Results:");
EncogUtility.Evaluate(network, trainingSet);
}
public void TestPersistEG()
{
IPopulation pop = Generate();
EncogDirectoryPersistence.SaveObject((EG_FILENAME), pop);
NEATPopulation pop2 = (NEATPopulation)EncogDirectoryPersistence.LoadObject((EG_FILENAME));
Validate(pop2);
}
/// <inheritdoc/>
public void MutateWeight(EncogRandom rnd, NEATLinkGene linkGene,
double weightRange)
{
double delta = rnd.NextGaussian() * _sigma;
double w = linkGene.Weight + delta;
w = NEATPopulation.ClampWeight(w, weightRange);
linkGene.Weight = w;
}
public void TestPersistSerial()
{
NEATPopulation pop = Generate();
SerializeObject.Save(SERIAL_FILENAME.ToString(), pop);
NEATPopulation pop2 = (NEATPopulation)SerializeObject.Load(SERIAL_FILENAME.ToString());
Validate(pop2);
}
/// <summary>
/// Create a new genome with the specified connection density. This
/// constructor is typically used to create the initial population.
/// </summary>
/// <param name="rnd">Random number generator.</param>
/// <param name="pop">The population.</param>
/// <param name="inputCount">The input count.</param>
/// <param name="outputCount">The output count.</param>
/// <param name="connectionDensity">The connection density.</param>
public NEATGenome(EncogRandom rnd, NEATPopulation pop,
int inputCount, int outputCount,
double connectionDensity)
{
AdjustedScore = 0;
InputCount = inputCount;
OutputCount = outputCount;
// get the activation function
IActivationFunction af = pop.ActivationFunctions.PickFirst();
// first bias
int innovationId = 0;
var biasGene = new NEATNeuronGene(NEATNeuronType.Bias, af,
inputCount, innovationId++);
_neuronsList.Add(biasGene);
// then inputs
for (var i = 0; i < inputCount; i++)
{
var gene = new NEATNeuronGene(NEATNeuronType.Input, af,
i, innovationId++);
_neuronsList.Add(gene);
}
// then outputs
for (int i = 0; i < outputCount; i++)
{
var gene = new NEATNeuronGene(NEATNeuronType.Output, af,
i + inputCount + 1, innovationId++);
_neuronsList.Add(gene);
}
// and now links
for (var i = 0; i < inputCount + 1; i++)
{
for (var j = 0; j < outputCount; j++)
{
// make sure we have at least one connection
if (_linksList.Count < 1 ||
rnd.NextDouble() < connectionDensity)
{
long fromId = this._neuronsList[i].Id;
long toId = this._neuronsList[inputCount + j + 1].Id;
double w = RangeRandomizer.Randomize(rnd, -pop.WeightRange, pop.WeightRange);
var gene = new NEATLinkGene(fromId, toId, true,
innovationId++, w);
_linksList.Add(gene);
}
}
}
}
private void Validate(NEATPopulation pop)
{
Assert.AreEqual(10, pop.PopulationSize);
Assert.AreEqual(0.2, pop.SurvivalRate);
// see if the population can actually be used to train
IMLDataSet trainingSet = new BasicMLDataSet(XOR.XORInput, XOR.XORIdeal);
ICalculateScore score = new TrainingSetScore(trainingSet);
IEvolutionaryAlgorithm train = NEATUtil.ConstructNEATTrainer(pop, score);
train.Iteration();
}
public void ResetTraining()
{
Substrate substrate = SubstrateFactory.factorSandwichSubstrate(11, 11);
BoxesScore score = new BoxesScore(11);
pop = new NEATPopulation(substrate, 500);
pop.ActivationCycles = 4;
pop.Reset();
train = NEATUtil.ConstructNEATTrainer(pop, score);
OriginalNEATSpeciation speciation = new OriginalNEATSpeciation();
train.Speciation = new OriginalNEATSpeciation();
}
/// <summary>
/// Construct a neat trainer with a new population. The new population is
/// created from the specified parameters.
/// </summary>
/// <param name="calculateScore">The score calculation object.</param>
/// <param name="inputCount">The input neuron count.</param>
/// <param name="outputCount">The output neuron count.</param>
/// <param name="populationSize">The population size.</param>
public NEATTraining(ICalculateScore calculateScore,
int inputCount, int outputCount,
int populationSize)
{
this.inputCount = inputCount;
this.outputCount = outputCount;
CalculateScore = new GeneticScoreAdapter(calculateScore);
Comparator = new GenomeComparator(CalculateScore);
Population = new NEATPopulation(inputCount, outputCount,
populationSize);
Init();
}
/// <summary>
/// Builds and trains a neat network.
/// </summary>
/// <param name="aset">The IMLDataset.</param>
/// <param name="inputcounts">The inputcounts.</param>
/// <param name="outputcounts">The outputcounts.</param>
/// <param name="populationsize">The populationsize.</param>
/// <param name="ToErrorTraining">To error rate you want to train too.</param>
/// <returns>a trained netnetwork.</returns>
public static NEATNetwork BuildTrainNeatNetwork(IMLDataSet aset, int inputcounts, int outputcounts, int populationsize, double ToErrorTraining)
{
NEATPopulation pop = new NEATPopulation(inputcounts, outputcounts, populationsize);
ICalculateScore score = new TrainingSetScore(aset);
// train the neural network
ActivationStep step = new ActivationStep();
step.Center = 0.5;
pop.OutputActivationFunction = step;
NEATTraining train = new NEATTraining(score, pop);
EncogUtility.TrainToError(train, ToErrorTraining);
NEATNetwork network = (NEATNetwork)train.Method;
return(network);
}
private void Validate(NEATPopulation pop)
{
Assert.AreEqual(0.3, pop.OldAgePenalty);
Assert.AreEqual(50, pop.OldAgeThreshold);
Assert.AreEqual(10, pop.PopulationSize);
Assert.AreEqual(0.2, pop.SurvivalRate);
Assert.AreEqual(10, pop.YoungBonusAgeThreshold);
Assert.AreEqual(0.3, pop.YoungScoreBonus);
// see if the population can actually be used to train
IMLDataSet trainingSet = new BasicMLDataSet(XOR.XORInput, XOR.XORIdeal);
ICalculateScore score = new TrainingSetScore(trainingSet);
NEATTraining train = new NEATTraining(score, pop);
train.Iteration();
}
/// <summary>
/// The entry point for this example. If you would like to make this example
/// stand alone, then add to its own project and rename to Main.
/// </summary>
/// <param name="args">Not used.</param>
public static void ExampleMain(string[] args)
{
IMLDataSet trainingSet = new BasicMLDataSet(XORInput, XORIdeal);
var pop = new NEATPopulation(2, 1, 1000);
pop.Reset();
pop.InitialConnectionDensity = 1.0; // not required, but speeds processing.
ICalculateScore score = new TrainingSetScore(trainingSet);
// train the neural network
var train = NEATUtil.ConstructNEATTrainer(pop, score);
EncogUtility.TrainToError(train, 0.01);
var network = (NEATNetwork)train.CODEC.Decode(train.BestGenome);
// test the neural network
Console.WriteLine(@"Neural Network Results:");
EncogUtility.Evaluate(network, trainingSet);
}
/// <summary>
/// Program entry point.
/// </summary>
/// <param name="app">Holds arguments and other info.</param>
public void Execute(IExampleInterface app)
{
IMLDataSet trainingSet = new BasicMLDataSet(XORInput, XORIdeal);
var pop = new NEATPopulation(2, 1, 1000);
ICalculateScore score = new TrainingSetScore(trainingSet);
// train the neural network
var step = new ActivationStep();
step.Center = 0.5;
pop.OutputActivationFunction = step;
var train = new NEATTraining(score, pop);
EncogUtility.TrainToError(train, 0.01);
var network = (NEATNetwork)train.Method;
network.ClearContext();
// test the neural network
Console.WriteLine(@"Neural Network Results:");
EncogUtility.Evaluate(network, trainingSet);
}
/// <summary>
/// Read the object.
/// </summary>
/// <param name="mask0">The stream to read the object from.</param>
/// <returns>The object that was loaded.</returns>
public virtual Object Read(Stream mask0)
{
var result = new NEATPopulation();
var innovationList = new NEATInnovationList {
Population = result
};
result.Innovations = innovationList;
var ins0 = new EncogReadHelper(mask0);
IDictionary <Int32, ISpecies> speciesMap = new Dictionary <Int32, ISpecies>();
IDictionary <ISpecies, Int32> leaderMap = new Dictionary <ISpecies, Int32>();
IDictionary <Int32, IGenome> genomeMap = new Dictionary <Int32, IGenome>();
EncogFileSection section;
while ((section = ins0.ReadNextSection()) != null)
{
if (section.SectionName.Equals("NEAT-POPULATION") &&
section.SubSectionName.Equals("INNOVATIONS"))
{
foreach (String line in section.Lines)
{
IList <String> cols = EncogFileSection.SplitColumns(line);
var innovation = new NEATInnovation
{
InnovationID = Int32.Parse(cols[0]),
InnovationType = StringToInnovationType(cols[1]),
NeuronType = StringToNeuronType(cols[2]),
SplitX = CSVFormat.EgFormat.Parse(cols[3]),
SplitY = CSVFormat.EgFormat.Parse(cols[4]),
NeuronID = Int32.Parse(cols[5]),
FromNeuronID = Int32.Parse(cols[6]),
ToNeuronID = Int32.Parse(cols[7])
};
result.Innovations.Add(innovation);
}
}
else if (section.SectionName.Equals("NEAT-POPULATION") &&
section.SubSectionName.Equals("SPECIES"))
{
foreach (String line in section.Lines)
{
String[] cols = line.Split(',');
var species = new BasicSpecies
{
SpeciesID = Int32.Parse(cols[0]),
Age = Int32.Parse(cols[1]),
BestScore = CSVFormat.EgFormat.Parse(cols[2]),
GensNoImprovement = Int32.Parse(cols[3]),
SpawnsRequired = CSVFormat.EgFormat
.Parse(cols[4])
};
species.SpawnsRequired = CSVFormat.EgFormat
.Parse(cols[5]);
leaderMap[(species)] = (Int32.Parse(cols[6]));
result.Species.Add(species);
speciesMap[((int)species.SpeciesID)] = (species);
}
}
else if (section.SectionName.Equals("NEAT-POPULATION") &&
section.SubSectionName.Equals("GENOMES"))
{
NEATGenome lastGenome = null;
foreach (String line in section.Lines)
{
IList <String> cols = EncogFileSection.SplitColumns(line);
if (cols[0].Equals("g", StringComparison.InvariantCultureIgnoreCase))
{
lastGenome = new NEATGenome
{
NeuronsChromosome = new Chromosome(),
LinksChromosome = new Chromosome()
};
lastGenome.Chromosomes.Add(lastGenome.NeuronsChromosome);
lastGenome.Chromosomes.Add(lastGenome.LinksChromosome);
lastGenome.GenomeID = Int32.Parse(cols[1]);
lastGenome.SpeciesID = Int32.Parse(cols[2]);
lastGenome.AdjustedScore = CSVFormat.EgFormat
.Parse(cols[3]);
lastGenome.AmountToSpawn = CSVFormat.EgFormat
.Parse(cols[4]);
lastGenome.NetworkDepth = Int32.Parse(cols[5]);
lastGenome.Score = CSVFormat.EgFormat.Parse(cols[6]);
result.Add(lastGenome);
genomeMap[(int)lastGenome.GenomeID] = lastGenome;
}
else if (cols[0].Equals("n", StringComparison.InvariantCultureIgnoreCase))
{
var neuronGene = new NEATNeuronGene
{
Id = Int32.Parse(cols[1]),
NeuronType = StringToNeuronType(cols[2]),
Enabled = Int32.Parse(cols[3]) > 0,
InnovationId = Int32.Parse(cols[4]),
ActivationResponse = CSVFormat.EgFormat
.Parse(cols[5]),
SplitX = CSVFormat.EgFormat.Parse(cols[6]),
SplitY = CSVFormat.EgFormat.Parse(cols[7])
};
lastGenome.Neurons.Add(neuronGene);
}
else if (cols[0].Equals("l", StringComparison.InvariantCultureIgnoreCase))
{
var linkGene = new NEATLinkGene();
linkGene.Id = Int32.Parse(cols[1]);
linkGene.Enabled = Int32.Parse(cols[2]) > 0;
linkGene.Recurrent = Int32.Parse(cols[3]) > 0;
linkGene.FromNeuronID = Int32.Parse(cols[4]);
linkGene.ToNeuronID = Int32.Parse(cols[5]);
linkGene.Weight = CSVFormat.EgFormat.Parse(cols[6]);
linkGene.InnovationId = Int32.Parse(cols[7]);
lastGenome.Links.Add(linkGene);
}
}
}
else if (section.SectionName.Equals("NEAT-POPULATION") &&
section.SubSectionName.Equals("CONFIG"))
{
IDictionary <String, String> paras = section.ParseParams();
result.NeatActivationFunction = EncogFileSection
.ParseActivationFunction(paras,
NEATPopulation.PropertyNEATActivation);
result.OutputActivationFunction = EncogFileSection
.ParseActivationFunction(paras,
NEATPopulation.PropertyOutputActivation);
result.Snapshot = EncogFileSection.ParseBoolean(paras,
PersistConst.Snapshot);
result.InputCount = EncogFileSection.ParseInt(paras,
PersistConst.InputCount);
result.OutputCount = EncogFileSection.ParseInt(paras,
PersistConst.OutputCount);
result.OldAgePenalty = EncogFileSection.ParseDouble(paras,
PopulationConst.PropertyOldAgePenalty);
result.OldAgeThreshold = EncogFileSection.ParseInt(paras,
PopulationConst.PropertyOldAgeThreshold);
result.PopulationSize = EncogFileSection.ParseInt(paras,
PopulationConst.PropertyPopulationSize);
result.SurvivalRate = EncogFileSection.ParseDouble(paras,
PopulationConst.PropertySurvivalRate);
result.YoungBonusAgeThreshhold = EncogFileSection.ParseInt(
paras, PopulationConst.PropertyYoungAgeThreshold);
result.YoungScoreBonus = EncogFileSection.ParseDouble(paras,
PopulationConst.PropertyYoungAgeBonus);
result.GenomeIDGenerate.CurrentID = EncogFileSection.ParseInt(paras,
PopulationConst.
PropertyNextGenomeID);
result.InnovationIDGenerate.CurrentID = EncogFileSection.ParseInt(paras,
PopulationConst.
PropertyNextInnovationID);
result.GeneIDGenerate.CurrentID = EncogFileSection.ParseInt(paras,
PopulationConst.
PropertyNextGeneID);
result.SpeciesIDGenerate.CurrentID = EncogFileSection.ParseInt(paras,
PopulationConst.
PropertyNextSpeciesID);
}
}
// now link everything up
// first put all the genomes into correct species
foreach (IGenome genome in result.Genomes)
{
var neatGenome = (NEATGenome)genome;
var speciesId = (int)neatGenome.SpeciesID;
if (speciesMap.ContainsKey(speciesId))
{
ISpecies s = speciesMap[speciesId];
s.Members.Add(neatGenome);
}
neatGenome.InputCount = result.InputCount;
neatGenome.OutputCount = result.OutputCount;
}
// set the species leader links
foreach (ISpecies species in leaderMap.Keys)
{
int leaderID = leaderMap[species];
IGenome leader = genomeMap[leaderID];
species.Leader = leader;
((BasicSpecies)species).Population = result;
}
return(result);
}
/// <summary>
/// Create a new genome with the specified connection density. This
/// constructor is typically used to create the initial population.
/// </summary>
/// <param name="rnd">Random number generator.</param>
/// <param name="pop">The population.</param>
/// <param name="inputCount">The input count.</param>
/// <param name="outputCount">The output count.</param>
/// <param name="connectionDensity">The connection density.</param>
public NEATGenome(EncogRandom rnd, NEATPopulation pop,
int inputCount, int outputCount,
double connectionDensity)
{
AdjustedScore = 0;
InputCount = inputCount;
OutputCount = outputCount;
// get the activation function
IActivationFunction af = pop.ActivationFunctions.PickFirst();
// first bias
int innovationId = 0;
var biasGene = new NEATNeuronGene(NEATNeuronType.Bias, af,
inputCount, innovationId++);
_neuronsList.Add(biasGene);
// then inputs
for (var i = 0; i < inputCount; i++)
{
var gene = new NEATNeuronGene(NEATNeuronType.Input, af,
i, innovationId++);
_neuronsList.Add(gene);
}
// then outputs
for (int i = 0; i < outputCount; i++)
{
var gene = new NEATNeuronGene(NEATNeuronType.Output, af,
i + inputCount + 1, innovationId++);
_neuronsList.Add(gene);
}
// and now links
for (var i = 0; i < inputCount + 1; i++)
{
for (var j = 0; j < outputCount; j++)
{
// make sure we have at least one connection
if (_linksList.Count < 1
|| rnd.NextDouble() < connectionDensity)
{
long fromId = this._neuronsList[i].Id;
long toId = this._neuronsList[inputCount + j + 1].Id;
double w = RangeRandomizer.Randomize(rnd, -pop.WeightRange, pop.WeightRange);
var gene = new NEATLinkGene(fromId, toId, true,
innovationId++, w);
_linksList.Add(gene);
}
}
}
}
/// <inheritdoc/>
public IMLMethod Decode(NEATPopulation pop, Substrate.Substrate substrate,
IGenome genome)
{
// obtain the CPPN
NEATCODEC neatCodec = new NEATCODEC();
NEATNetwork cppn = (NEATNetwork)neatCodec.Decode(genome);
List <NEATLink> linkList = new List <NEATLink>();
IActivationFunction[] afs = new IActivationFunction[substrate.NodeCount];
IActivationFunction af = new ActivationSteepenedSigmoid();
// all activation functions are the same
for (int i = 0; i < afs.Length; i++)
{
afs[i] = af;
}
double c = this.MaxWeight / (1.0 - this.MinWeight);
BasicMLData input = new BasicMLData(cppn.InputCount);
// First create all of the non-bias links.
foreach (SubstrateLink link in substrate.Links)
{
SubstrateNode source = link.Source;
SubstrateNode target = link.Target;
int index = 0;
foreach (double d in source.Location)
{
input.Data[index++] = d;
}
foreach (double d in target.Location)
{
input.Data[index++] = d;
}
IMLData output = cppn.Compute(input);
double weight = output[0];
if (Math.Abs(weight) > this.MinWeight)
{
weight = (Math.Abs(weight) - this.MinWeight) * c
* Math.Sign(weight);
linkList.Add(new NEATLink(source.ID, target.ID,
weight));
}
}
// now create biased links
input.Clear();
int d2 = substrate.Dimensions;
IList <SubstrateNode> biasedNodes = substrate.GetBiasedNodes();
foreach (SubstrateNode target in biasedNodes)
{
for (int i = 0; i < d2; i++)
{
input.Data[d2 + i] = target.Location[i];
}
IMLData output = cppn.Compute(input);
double biasWeight = output[1];
if (Math.Abs(biasWeight) > this.MinWeight)
{
biasWeight = (Math.Abs(biasWeight) - this.MinWeight) * c
* Math.Sign(biasWeight);
linkList.Add(new NEATLink(0, target.ID, biasWeight));
}
}
// check for invalid neural network
if (linkList.Count == 0)
{
return(null);
}
linkList.Sort();
NEATNetwork network = new NEATNetwork(substrate.InputCount,
substrate.OutputCount, linkList, afs);
network.ActivationCycles = substrate.ActivationCycles;
return(network);
}
/// <summary>
/// Construct a random HyperNEAT genome.
/// </summary>
/// <param name="rnd">Random number generator.</param>
/// <param name="pop">The target population.</param>
/// <param name="inputCount">The input count.</param>
/// <param name="outputCount">The output count.</param>
/// <param name="connectionDensity">The connection densitoy, 1.0 for fully connected.</param>
public HyperNEATGenome(EncogRandom rnd, NEATPopulation pop,
int inputCount, int outputCount,
double connectionDensity)
: base(rnd, pop, inputCount, outputCount, connectionDensity)
{
}
/// <summary>
/// Construct a neat trainer with a new population. The new population is
/// created from the specified parameters.
/// </summary>
/// <param name="calculateScore">The score calculation object.</param>
/// <param name="inputCount">The input neuron count.</param>
/// <param name="outputCount">The output neuron count.</param>
/// <param name="populationSize">The population size.</param>
public NEATTraining(ICalculateScore calculateScore,
int inputCount, int outputCount,
int populationSize)
{
this.inputCount = inputCount;
this.outputCount = outputCount;
CalculateScore = new GeneticScoreAdapter(calculateScore);
Comparator = new GenomeComparator(CalculateScore);
Population = new NEATPopulation(inputCount, outputCount,
populationSize);
Init();
}
