public MZTabDescription(string version, MzTabMode mzTabMode, MzTabType mzTabType)
{
this.version = version ?? default_version;
_mzTabMode = mzTabMode;
_mzTabType = mzTabType;
}
public bool IsMandatory(MzTabType type, MzTabMode mode)
{
return GetFieldType(type, mode).Equals("mandatory", StringComparison.CurrentCultureIgnoreCase);
}
public string GetFieldType(MzTabType type, MzTabMode mode)
{
int[] i = ArrayUtils.IndicesOf(_types, type);
if (i.Length == 0){
return null;
}
var temp1 = ArrayUtils.SubArray(_modes, i);
var temp2 = ArrayUtils.SubArray(_results, i);
i = ArrayUtils.IndicesOf(temp1, mode);
if (i.Length == 0){
return null;
}
temp2 = ArrayUtils.SubArray(temp2, i);
return temp2.FirstOrDefault();
}
public void Add(MzTabType type, MzTabMode mode, string result)
{
_types.Add(type);
_modes.Add(mode);
_results.Add(result);
}
public string GetFieldType(MzTabType type, MzTabMode mode)
{
return _fieldType.GetFieldType(type, mode);
}
/**
* Refine optional columns based one {@link MZTabDescription.Mode} and {@link MZTabDescription.Type}
* These re-validate operation will called in {@link #refine()} method.
*/
protected void refineOptionalColumn(MzTabMode mode, MzTabType type, string columnHeader)
{
if (factory.FindColumnByHeader(columnHeader) == null){
throw new MZTabException(new MZTabError(LogicalErrorType.NotDefineInHeader, _lineNumber, columnHeader,
mode.ToString(), type.ToString()));
}
}
public MZTabDescription(MzTabMode mzTabMode, MzTabType mzTabType)
: this(null, mzTabMode, mzTabType)
{
}