//Properly handles removing a protein and updating FDR's, peptide lists, scan lists
public void RemoveProtein(List <MyProtein> proteins)
{
//For each of this protein's peptide lets see if this peptide still maps to some other protein, or else we should remove it.
foreach (MyProtein p in proteins)
{
MyProteins.MyProteinList.Remove(p);
List <string> remainingProteins = MyProteins.MyProteinList.Select(a => a.Locus).ToList();
List <PeptideResult> peptidesToRemove = new List <PeptideResult>();
foreach (PeptideResult pr in p.PeptideResults)
{
if (pr.MyMapableProteins.Intersect(remainingProteins).ToList().Count == 0)
{
peptidesToRemove.Add(pr);
}
}
foreach (PeptideResult pr in peptidesToRemove)
{
PeptideResult pr2 = MyProteins.MyPeptideList.Find(a => a.PeptideSequence.Equals(pr.CleanedPeptideSequence));
bool removed = MyProteins.MyPeptideList.Remove(pr2);
}
}
MyProteins.RebuildScansFromProteins();
MyFDRResult = FDRStatistics.GenerateFDRStatistics(MyProteins, MyParameters);
NotifyPropertyChanged("MyProteinList");
}
internal bool HasCommonProtein(List <MyProtein> list, int minNoPeptides)
{
foreach (MyProtein externalProtein in list)
{
int index = MyProteins.FindIndex(a => a.DistinctPeptides.Intersect(externalProtein.DistinctPeptides).Count() > minNoPeptides);
if (index > -1)
{
return(true);
}
}
return(false);
}