public void TestFilter()
{
var pro1 = new IdentifiedProtein("P1");
pro1.Peptides.Add(new IdentifiedPeptide(new IdentifiedSpectrum() { Charge = 1 }));
pro1.Peptides.Add(new IdentifiedPeptide(new IdentifiedSpectrum() { Charge = 2 }));
var pro2 = new IdentifiedProtein("P2");
pro2.Peptides.Add(new IdentifiedPeptide(new IdentifiedSpectrum() { Charge = 3 }));
var g1 = new IdentifiedProteinGroup();
g1.Add(pro1);
var g2 = new IdentifiedProteinGroup();
g2.Add(pro2);
IdentifiedResult ir = new IdentifiedResult();
ir.Add(g1);
ir.Add(g2);
Assert.AreEqual(2, ir.Count);
Assert.AreEqual(3, ir.GetSpectra().Count);
ir.Filter(m => { return m.Spectrum.Query.Charge > 1; });
Assert.AreEqual(2, ir.Count);
Assert.AreEqual(2, ir.GetSpectra().Count);
ir.GetSpectra().All(m => { return m.Charge > 1; });
ir.Filter(m => { return m.Spectrum.Query.Charge > 2; });
Assert.AreEqual(1, ir.Count);
Assert.AreEqual(1, ir.GetSpectra().Count);
ir.GetSpectra().All(m => { return m.Charge > 2; });
Assert.AreEqual("P2", ir[0][0].Name);
}
public void TestFilter2()
{
var spectrum = new IdentifiedSpectrum();
spectrum.Query.FileScan.LongFileName = "ABDCDD.12.123.2.dat";
var pro1 = new IdentifiedProtein("P1");
pro1.Peptides.Add(new IdentifiedPeptide(spectrum) { Sequence = "AAAAAAA" });
var pro2 = new IdentifiedProtein("P2");
pro2.Peptides.Add(new IdentifiedPeptide(spectrum) { Sequence = "BBBBBBB" });
var g1 = new IdentifiedProteinGroup();
g1.Add(pro1);
g1.Add(pro2);
IdentifiedResult ir = new IdentifiedResult();
ir.Add(g1);
Assert.AreEqual(1, ir.Count);
Assert.AreEqual(2, ir[0].Count);
Assert.AreEqual(1, ir.GetSpectra().Count);
ir.Filter(m =>
{
return m.Sequence.Contains('A');
});
Assert.AreEqual(1, ir.Count);
Assert.AreEqual(1, ir[0].Count);
Assert.AreEqual(1, ir.GetSpectra().Count);
Assert.AreSame(pro1, ir[0][0]);
ir.Filter(m =>
{
return m.Sequence.Contains('C');
});
Assert.AreEqual(0, ir.Count);
}
