private void addStaticReactions(IMoleculeBuilder moleculeBuilder, string modelName)
{
foreach (var reaction in _staticReactionRepository.AllFor(modelName))
{
var reactionBuilder = _processBuilderMapper.ReactionFrom(reaction, moleculeBuilder.Name, _allMoleculeNames, _reactionBuildingBlock.FormulaCache);
//some reactions are compound-independent (e.g. "FcRn binding endogenous Igg")
//if we have >1 compounds, we must check that reaction was not added previously
if (_reactionBuildingBlock.ExistsByName(reactionBuilder.Name))
{
continue;
}
_reactionBuildingBlock.Add(reactionBuilder);
}
}
protected override void Context()
{
base.Context();
_reaction1 = new ReactionBuilder().WithName("Reaction");
_parameter = new Parameter().WithName("ReferencFrom").WithParentContainer(_reaction1);
_otherParameter = new Parameter().WithName("ToReference").WithParentContainer(_reaction1);
_reaction2 = new ReactionBuilder().WithName("Reaction2");
_reaction3 = new ReactionBuilder().WithName("A Reaction");
_otherParameter2 = new Parameter().WithName("ToReference").WithParentContainer(_reaction2);
_reactionBuilidingBlock = new ReactionBuildingBlock();
_reactionBuilidingBlock.Add(_reaction1);
_reactionBuilidingBlock.Add(_reaction2);
_reactionBuilidingBlock.Add(_reaction3);
}
protected override void Context()
{
base.Context();
_reactionBuildingBlock = new ReactionBuildingBlock();
_firstNode = A.Fake <IBaseNode>();
A.CallTo(() => _firstNode.Id).Returns("Id1");
A.CallTo(() => _firstNode.Name).Returns("Name");
_secondBuilder = new ReactionBuilder {
Name = "Name", Id = "Id2"
};
_simulation.Reactions = _reactionBuildingBlock;
_reactionBuildingBlock.Add(_secondBuilder);
_diagramModel = A.Fake <IDiagramModel>();
A.CallTo(() => _simulation.ReactionDiagramModel).Returns(_diagramModel);
A.CallTo(() => _diagramModel.FindByName(_secondBuilder.Name)).Returns(_firstNode);
}