public WcfProcessor(IDetector detector, IDependencyValidator dependencyValidator, IConfigFileAppender fileAppender, IFileMover assemblyMover)
{
this.detector = detector;
this.dependencyValidator = dependencyValidator;
this.fileAppender = fileAppender;
this.assemblyMover = assemblyMover;
}
public ImageSaverController(IFileSaver fileSaver, IFileMover fileMover, IFileDeleter fileDeleter, ILogger <ImageSaverController> logger)
{
_fileSaver = fileSaver;
_fileMover = fileMover;
_fileDeleter = fileDeleter;
_logger = logger;
}
public PhysicalFileOrganizer(FilesOrganizerOptions options, IFileMover mover, IFileEnumerator enumerator, IMapper mapper)
{
this.Options = options ?? throw new ArgumentNullException(nameof(options));
this.FileMover = mover ?? throw new ArgumentNullException(nameof(mover));
this.FileEnumerator = enumerator ?? throw new ArgumentNullException(nameof(enumerator));
this.Mapper = mapper ?? throw new ArgumentNullException(nameof(mapper));
}
public DownloadsModel(IFileMover fileMover, IDatabase database, IFileMoveWorker fileMoveWorker, IJDownloader jDownloader)
{
_fileMover = fileMover;
_database = database;
_fileMoveWorker = fileMoveWorker;
_jDownloader = jDownloader;
}
public CreateModel(IDatabase db, IPlex plex, IFileMover file)
{
//_context = context;
_db = db;
_plex = plex;
_file = file;
}
private void Move(CanvasSmallPedigreeOutput source, IFileMover fileMover)
{
source.CnvVcf.Move(GetCnvVcf(), fileMover.Move);
source.IntermediateOutputs.ForEach(kvp =>
{
MoveIntermediateOutput(kvp.Key, kvp.Value, fileMover);
});
}
public FileServices(
[NotNull] ILogger logger, [NotNull] IFileCopier fileCopier, [NotNull] IFileMover fileMover,
[NotNull] IStreamComparer streamComparer, [NotNull] ITypeHelper typeHelper)
{
_Logger = logger ?? throw new ArgumentNullException(nameof(logger));
_FileCopier = fileCopier ?? throw new ArgumentNullException(nameof(fileCopier));
_FileMover = fileMover ?? throw new ArgumentNullException(nameof(fileMover));
_StreamComparer = streamComparer ?? throw new ArgumentNullException(nameof(streamComparer));
_TypeHelper = typeHelper ?? throw new ArgumentNullException(nameof(typeHelper));
}
public Renamer()
{
this.logger = new Logger();
this.settings = new Settings(logger);
this.fileSearcher = new FileSearcher(settings, logger);
this.movieFileBot = new FileBot(settings, logger, true);
this.seriesFileBot = new FileBot(settings, logger, false);
this.cleaner = new Cleaner(settings, fileSearcher, logger);
this.pathGenerator = new PathGenerator();
this.fileMover = new FileMover(logger);
this.cleaner = new Cleaner(settings, fileSearcher, logger);
this.archiver = new Archiver(settings, fileMover);
}
public ThirdPartyFileProcessUtility(IMessageBroker <AddressLocationUSRDTO> messageBroker,
IFileMover fileMover, IExceptionHelper exceptionHelper,
ILoggingHelper loggingHelper,
IConfigurationHelper configHelper)
{
this.msgBroker = messageBroker;
this.fileMover = fileMover;
this.loggingHelper = loggingHelper;
this.configHelper = configHelper;
this.xsdLocation = configHelper.ReadAppSettingsConfigurationValues(ThirdPartyLoaderConstants.XSDLOCATIONCONFIG);
this.processed = configHelper.ReadAppSettingsConfigurationValues(ThirdPartyLoaderConstants.USRPROCESSEDFILEPATHCONFIG);
this.error = configHelper.ReadAppSettingsConfigurationValues(ThirdPartyLoaderConstants.USRERRORFILEPATHCONFIG);
}
public List <(string key, string error)> IsValid(IPlex plex, IFileMover files, bool isNewEntry = false)
{
var errs = new List <(string key, string error)>();
if (!plex.ResolvePlexId(this) && !isNewEntry)
{
errs.Add((nameof(Series) + "." + nameof(Name), "The given name could not be found on the Plex server."));
}
if (SearchNewEpisodes)
{
if (string.IsNullOrWhiteSpace(EpGuidesName))
{
errs.Add((nameof(Series) + "." + nameof(EpGuidesName), "If searching for new episodes is enabled, a search name needs to be specified."));
}
if (string.IsNullOrWhiteSpace(SubtitlesName))
{
if (isNewEntry)
{
SubtitlesName = Name;
}
else
{
errs.Add((nameof(Series) + "." + nameof(SubtitlesName), "If searching for new episodes is enabled, a search name needs to be specified."));
}
}
if (string.IsNullOrWhiteSpace(VideoSearch))
{
if (isNewEntry)
{
VideoSearch = Name;
}
else
{
errs.Add((nameof(Series) + "." + nameof(VideoSearch), "If searching for new episodes is enabled, a search name needs to be specified."));
}
}
}
if (errs.Count == 0)
{
if (!files.ValidateSeriesPath(this, isNewEntry))
{
errs.Add((nameof(Series) + "." + nameof(DirectoryName), "The directory does not exist and could not be created."));
}
}
return(errs);
}
public VideoMover(Settings settings, IFileMover fileMover, ILogger logger, bool debug = false)
{
_log = logger;
_debug = debug;
if (settings == null)
{
throw new ArgumentNullException(nameof(settings));
}
if (fileMover == null)
{
throw new ArgumentNullException(nameof(fileMover));
}
_settings = settings;
_filemover = fileMover;
IFileNameParser parser = new VideoFileNameParser(GetExlusionFilter());
_factory = new MoveableFileFactory(parser, _settings.SeriesPattern);
}
public SubtitlesModel(IDatabase database, IFileMover fileMover, ILogger <SubtitlesModel> logger)
{
_database = database;
_fileMover = fileMover;
_logger = logger;
}
public FileScanner(IUiInteraction uiInteraction, IFileMover fileMover, string directorydestination)
{
this.uiInteraction = uiInteraction;
this.fileMover = fileMover;
this.directorydestination = directorydestination;
}
public PhotoSorterEngine(IFileMover fileMover, IPhotoSource photoSource, IUserInterface userInterface)
{
_fileMover = fileMover;
_photoSource = photoSource;
_userInterface = userInterface;
}
private void MoveIntermediateOutput(SampleInfo info, IntermediateOutput output, IFileMover fileMover)
{
var stub = GetStub(info.Id);
fileMover.Move(output.CoverageAndVariantFrequencies, SingleSampleCallset.GetCoverageAndVariantFrequencyOutput(stub));
if (_canvasWorkerFactory.IncludeIntermediateResults())
{
fileMover.Move(output.Partitioned, SingleSampleCallset.GetPartitionedPath(stub));
fileMover.Move(output.VariantFrequencies, SingleSampleCallset.GetVfSummaryPath(stub));
fileMover.Move(output.VariantFrequenciesBaf, SingleSampleCallset.GetVfSummaryPath(stub));
}
}
public CanvasSmallPedigreeOutput Run(CanvasSmallPedigreeInput input, IDirectoryLocation sandbox, IFileMover fileMover)
{
_logger.Info("Canvas is disabled.");
return(null);
}
public CanvasSmallPedigreeOutput Run(CanvasSmallPedigreeInput input, IDirectoryLocation sandbox, IFileMover fileMover)
{
var output = _wrapper.Run(input, sandbox);
_move(output, fileMover);
return(_load(input));
}
public Archiver(ISettings settings, IFileMover fileMover)
{
this.settings = settings;
this.fileMover = fileMover;
}
public Model(IFileMover fileMover)
{
//Some different testing comments
FileMover = fileMover;
}
public EditModel(IDatabase db, IPlex plex, IFileMover file)
{
_db = db;
_plex = plex;
_files = file;
}
private void MoveIntermediateOutput(SampleInfo info, IntermediateOutput output, IFileMover fileMover)
{
var stub = GetSingleSampleOutputStub(info);
// Output:
fileMover.Move(output.CnvVcf.VcfFile, SingleSampleCallset.GetVcfOutput(stub));
// Files for visualization:
fileMover.Move(output.CoverageBigwig, SingleSampleCallset.GetCoverageBigWig(stub));
var targetBAlleleBedgraph = SingleSampleCallset.GetBAlleleBedGraph(stub);
fileMover.Move(output.BAlleleBedgraph.FileLocation, targetBAlleleBedgraph.FileLocation);
fileMover.Move(output.BAlleleBedgraph.TabixIndex, targetBAlleleBedgraph.TabixIndex);
var targetCopyNumbedBedgraph = SingleSampleCallset.GetCopyNumberBedGraph(stub);
fileMover.Move(output.CopyNumberBedgraph.FileLocation, targetCopyNumbedBedgraph.FileLocation);
fileMover.Move(output.CopyNumberBedgraph.TabixIndex, targetCopyNumbedBedgraph.TabixIndex);
// Deprecated files:
#pragma warning disable CS0618 // Type or member is obsolete
fileMover.Move(output.CoverageAndVariantFrequencies, SingleSampleCallset.GetCoverageAndVariantFrequencyOutput(stub)); // Used for (non-dynamic) plotting
fileMover.Move(output.Partitioned, SingleSampleCallset.GetPartitionedPath(stub)); // used by BSVI
fileMover.Move(output.VariantFrequencies, SingleSampleCallset.GetVfSummaryPath(stub)); // used by BSVI
fileMover.Move(output.VariantFrequenciesBaf, SingleSampleCallset.GetVfSummaryBafPath(stub)); // used by BSVI
#pragma warning restore CS0618 // Type or member is obsolete
}
