/// <summary>
/// Constructor.
/// </summary>
/// <param name="featureCache">LCMS Features</param>
/// <param name="clusterCache">LCMS Feature clusters</param>
/// <param name="msFeatureCache">MS Features</param>
/// <param name="msnFeatureCache">MS/MS Features</param>
/// <param name="msFeatureMap">MS To LCMS Feature map</param>
/// <param name="msnFeatureMap">MS to MSn Feature map</param>
public FeatureDataAccessProviders(IUmcDAO featureCache,
IUmcClusterDAO clusterCache,
IMSFeatureDAO msFeatureCache,
IMSnFeatureDAO msnFeatureCache,
IMsnFeatureToMSFeatureDAO msnFeatureMap,
IDatasetDAO datasetCache,
IMassTagMatchDAO massTagMatches,
IMassTagDAO massTags,
IFactorDao factorCache,
IDatasetToFactorMapDAO factorAssignmentCache,
IMSMSClusterMapDAO msmsClusterCache,
IDatabaseSearchSequenceDAO sequenceCache,
ISequenceToMsnFeatureDAO sequenceMapCache) :
this()
{
ClusterCache = clusterCache;
FeatureCache = featureCache;
MSFeatureCache = msFeatureCache;
MSnFeatureCache = msnFeatureCache;
MSFeatureToMSnFeatureCache = msnFeatureMap;
DatasetCache = datasetCache;
MassTagMatches = massTagMatches;
MassTags = massTags;
FactorAssignmentCache = factorAssignmentCache;
FactorCache = factorCache;
MSMSClusterCache = msmsClusterCache;
DatabaseSequenceCache = sequenceCache;
SequenceMsnMapCache = sequenceMapCache;
}
/// <summary>
/// Constructor.
/// </summary>
/// <param name="featureCache">LCMS Features</param>
/// <param name="clusterCache">LCMS Feature clusters</param>
/// <param name="msFeatureCache">MS Features</param>
/// <param name="msnFeatureCache">MS/MS Features</param>
/// <param name="msFeatureMap">MS To LCMS Feature map</param>
/// <param name="msnFeatureMap">MS to MSn Feature map</param>
public FeatureDataAccessProviders(IUmcDAO featureCache,
IUmcClusterDAO clusterCache,
IMSFeatureDAO msFeatureCache,
IMSnFeatureDAO msnFeatureCache,
IMsnFeatureToMSFeatureDAO msnFeatureMap,
IDatasetDAO datasetCache,
IMassTagMatchDAO massTagMatches,
IMassTagDAO massTags,
IFactorDao factorCache,
IDatasetToFactorMapDAO factorAssignmentCache,
IMSMSClusterMapDAO msmsClusterCache,
IDatabaseSearchSequenceDAO sequenceCache,
ISequenceToMsnFeatureDAO sequenceMapCache)
: this()
{
ClusterCache = clusterCache;
FeatureCache = featureCache;
MSFeatureCache = msFeatureCache;
MSnFeatureCache = msnFeatureCache;
MSFeatureToMSnFeatureCache = msnFeatureMap;
DatasetCache = datasetCache;
MassTagMatches = massTagMatches;
MassTags = massTags;
FactorAssignmentCache = factorAssignmentCache;
FactorCache = factorCache;
MSMSClusterCache = msmsClusterCache;
DatabaseSequenceCache = sequenceCache;
SequenceMsnMapCache = sequenceMapCache;
}
/// <summary>
/// Constructor.
/// </summary>
/// <param name="datasets">Datasets to store data about.</param>
public MultiAlignFactorSink(ObservableCollection<DatasetInformation> datasets,
IDatasetDAO datasetProvider,
IFactorDao factorProvider,
IDatasetToFactorMapDAO datasetToFactorMapProvider)
{
m_factorMaps = new Dictionary<string, Dictionary<string, int>>();
m_factors = new List<ExperimentalFactor>();
m_factorAssignments = new List<DatasetToExperimentalFactorMap>();
m_datasets = new Dictionary<string, DatasetInformation>();
m_datasetProvider = datasetProvider;
m_factorProvider = factorProvider;
m_datasetFactorMapProvider = datasetToFactorMapProvider;
m_columnMapping = new Dictionary<string, int>();
foreach (var info in datasets)
{
m_datasets.Add(info.DatasetName, info);
}
}
/// <summary>
/// Constructor.
/// </summary>
/// <param name="datasets">Datasets to store data about.</param>
public MultiAlignFactorSink(ObservableCollection <DatasetInformation> datasets,
IDatasetDAO datasetProvider,
IFactorDao factorProvider,
IDatasetToFactorMapDAO datasetToFactorMapProvider)
{
m_factorMaps = new Dictionary <string, Dictionary <string, int> >();
m_factors = new List <ExperimentalFactor>();
m_factorAssignments = new List <DatasetToExperimentalFactorMap>();
m_datasets = new Dictionary <string, DatasetInformation>();
m_datasetProvider = datasetProvider;
m_factorProvider = factorProvider;
m_datasetFactorMapProvider = datasetToFactorMapProvider;
m_columnMapping = new Dictionary <string, int>();
foreach (var info in datasets)
{
m_datasets.Add(info.DatasetName, info);
}
}
