public void Validate()
{
if (!System.IO.File.Exists(this.filepath))
{
throw new System.Exception("Missing file: " + this.filepath);
}
DdiValidator validator = new DdiValidator(this.filepath, DdiFileFormat.Ddi32);
if (validator.Validate())
{
doc = validator.ValidatedXDocument;
}
else
{
throw new System.Exception("Invalid file: " + this.filepath);
}
}
public void Execute()
{
// Load the DDI 3.2 toplevel file.
if (!System.IO.File.Exists(fileName))
{
Trace.WriteLine(" missing file: " + fileName);
return;
}
var validator = new DdiValidator(fileName, DdiFileFormat.Ddi32);
bool isValid = validator.Validate();
var doc = validator.ValidatedXDocument;
var deserializer = new Ddi32Deserializer();
var harmonized = deserializer.HarmonizeIdentifiers(doc, DdiFileFormat.Ddi32);
var instance = deserializer.GetDdiInstance(doc.Root);
// Get a list of all items contained in the DdiInstance.
var gatherer = new ItemGathererVisitor();
instance.Accept(gatherer);
var allItems = gatherer.FoundItems;
//mesh in the instrument references
//nb: ItemName seems to be the empty string rather than null if it does not exist in the ddi file
var dataCollections = allItems.OfType <DataCollection>().Where(x => string.Compare(x.ItemName.Best, "") != 0);
foreach (var dc in dataCollections)
{
var instrumentName = dc.ItemName.Best + "-in-000001";
var instruments = WorkingSet.OfType <Instrument>().Where(x => string.Compare(x.UserIds[0].Identifier, instrumentName, ignoreCase: true) == 0);
var ic = instruments.Count();
if (ic == 1)
{
dc.AddChild(instruments.First());
}
else if (ic > 1)
{
Trace.WriteLine(" more than one instrument found for " + instrumentName);
}
else
{
Trace.WriteLine(" no instrument found for " + instrumentName);
//to do: try repo
//var client = Utility.GetClient();
//var facet = new SearchFacet();
//facet.ItemTypes.Add(DdiItemType.Instrument);
//SearchResponse response = client.Search(facet);
//if (response.ReturnedResults > 1)
//{
// var repoInstruments = client.GetItems(response.Results);
//}
}
}
//mesh in variable set references
//I assume that there may be more than one corresponding dataset (i.e. its log prod, phys prod...) with same base name but with a hyphenated suffix
//get all the study units (from toplevel, assumed) and go through all its data collections
//find the logical products with a base name matching the data collection name and attach them to the study unit
//find physical data product and do the same, -I assume sdk physical product is ddi physical data product?-
//find physicalInstance with base alternate title matching data collection name and attach them to the study unit
var studyUnits = allItems.OfType <StudyUnit>();
foreach (var su in studyUnits)
{
foreach (var dc in su.DataCollections.Where(x => string.Compare(x.ItemName.Best, "") != 0))
{
var dcName = dc.ItemName.Best;
var matchingLogicalProducts = WorkingSet.OfType <LogicalProduct>().Where(x => string.Compare(x.ItemName.Best.Split('-')[0], dcName, ignoreCase: true) == 0);
var lpc = matchingLogicalProducts.Count();
//if (lpc == 1)
// su.AddChild(matchingLogicalProducts.First());
//else if (lpc > 1)
// Trace.WriteLine(" more than one logical product found for " + dcName);
if (lpc > 0)
{
foreach (var lp in matchingLogicalProducts)
{
su.AddChild(lp);
}
}
else
{
Trace.WriteLine(" no logical product found for " + dcName);
}
var matchingPhysicalProducts = WorkingSet.OfType <PhysicalProduct>().Where(x => string.Compare(x.ItemName.Best.Split('-')[0], dcName, ignoreCase: true) == 0);
var pdpc = matchingPhysicalProducts.Count();
//if (pdpc == 1)
// su.AddChild(matchingPhysicalProducts.First());
//else if (pdpc > 1)
// Trace.WriteLine(" more than one physical data product found for " + dcName);
if (pdpc > 0)
{
foreach (var pp in matchingPhysicalProducts)
{
su.AddChild(pp);
}
}
else
{
Trace.WriteLine(" no physical data product found for " + dcName);
}
var matchingPhysicalInstances = WorkingSet.OfType <PhysicalInstance>().Where(x => string.Compare(x.DublinCoreMetadata.AlternateTitle.Best.Split('-')[0], dcName, ignoreCase: true) == 0);
var pic = matchingPhysicalInstances.Count();
//if (pic == 1)
// su.AddChild(matchingPhysicalInstances.First());
//else if (pic > 1)
// Trace.WriteLine(" more than one physical instance found for " + dcName);
if (pic > 0)
{
foreach (var pi in matchingPhysicalInstances)
{
su.AddChild(pi);
}
}
else
{
Trace.WriteLine(" no physical instance found for " + dcName);
}
var matchingResourcePackages = WorkingSet.OfType <ResourcePackage>().Where(x => string.Compare(x.DublinCoreMetadata.AlternateTitle.Best.Split('-')[0], dcName, ignoreCase: true) == 0);
var rpc = matchingResourcePackages.Count();
//if (rpc == 1)
// su.AddChild(matchingResourcePackages.First());
//else if (rpc > 1)
// Trace.WriteLine(" more than one resource package found for " + dcName);
if (rpc > 0)
{
foreach (var rp in matchingResourcePackages)
{
su.AddChild(rp);
}
}
else
{
Trace.WriteLine(" no resource package found for " + dcName);
}
}
}
// Add the items to the working set.
WorkingSet.AddRange(allItems);
}
public void Execute()
{
// Load the DDI 3.2 file.
if (!System.IO.File.Exists(fileName))
{
//throw new System.Exception("...Missing file: " + fileName);
Trace.WriteLine(" missing file: " + fileName);
return;
}
var validator = new DdiValidator(fileName, DdiFileFormat.Ddi32);
bool isValid = validator.Validate();
var doc = validator.ValidatedXDocument;
var deserializer = new Ddi32Deserializer();
var harmonized = deserializer.HarmonizeIdentifiers(doc, DdiFileFormat.Ddi32);
var instance = deserializer.GetDdiInstance(doc.Root);
// Get a list of all items contained in the DdiInstance.
var gatherer = new ItemGathererVisitor();
instance.Accept(gatherer);
var allItems = gatherer.FoundItems;
//test if there is a caddies-style question scheme (non-grid)
//in which case add parameters
var questionSchemes = allItems.OfType <QuestionScheme>().Where(x => string.Compare(x.ItemName.Best.Substring(x.ItemName.Best.Length - 5, 5), "_qs01") == 0);
if (questionSchemes.Count() != 0)
{
var questionItems = questionSchemes.First().Questions;
foreach (var qi in questionItems)
{
var p = new Parameter();
p.ParameterType = InstrumentParameterType.Out;
p.Name.Add("en-GB", "p_" + qi.ItemName.Best);
qi.OutParameters.Add(p);
}
//I assume that there are the corresponding caddies question constructs
//add an InParameter based on the first (the only) OutParameter of its QuestionItem,
//an OutputParameter based on the construct name
//and a binding between the two
var questionConstructs = allItems.OfType <QuestionActivity>();
foreach (var qc in questionConstructs)
{
if (qc.Question != null)
{
var p = new Parameter();
p.ParameterType = InstrumentParameterType.In;
p.Name.Add("en-GB", qc.Question.OutParameters.First().Name.Best);
qc.InParameters.Add(p);
var p2 = new Parameter();
p2.ParameterType = InstrumentParameterType.Out;
p2.Name.Add("en-GB", "p_" + qc.ItemName.Best);
qc.OutParameters.Add(p2);
var b = new Binding();
//b.SourceParameter = p;
//b.TargetParameter = p2;
//qc.Bindings.Add(b);
}
else if (qc.QuestionGrid != null)
{
continue;
}
else
{
Trace.WriteLine(" question construct with no source");
}
}
}
// Add the items to the working set.
WorkingSet.AddRange(allItems);
}
public void Execute()
{
// Load the DDI 3.2 toplevel file.
if (!System.IO.File.Exists(fileName))
{
Trace.WriteLine(" missing file: " + fileName);
return;
}
var validator = new DdiValidator(fileName, DdiFileFormat.Ddi32);
bool isValid = validator.Validate();
var doc = validator.ValidatedXDocument;
var deserializer = new Ddi32Deserializer();
var harmonized = deserializer.HarmonizeIdentifiers(doc, DdiFileFormat.Ddi32);
var instance = deserializer.GetDdiInstance(doc.Root);
// Get a list of all items contained in the DdiInstance.
var gatherer = new ItemGathererVisitor();
instance.Accept(gatherer);
var allItems = gatherer.FoundItems;
//mesh in the instrument references
//nb: ItemName seems to be the empty string rather than null if it does not exist in the ddi file
var dataCollections = allItems.OfType<DataCollection>().Where(x => string.Compare(x.ItemName.Best, "") != 0);
foreach (var dc in dataCollections)
{
var instrumentName = dc.ItemName.Best + "-in-000001";
var instruments = WorkingSet.OfType<Instrument>().Where(x => string.Compare(x.UserIds[0].Identifier, instrumentName, ignoreCase: true) == 0);
var ic = instruments.Count();
if (ic == 1)
dc.AddChild(instruments.First());
else if (ic > 1)
Trace.WriteLine(" more than one instrument found for " + instrumentName);
else
{
Trace.WriteLine(" no instrument found for " + instrumentName);
//to do: try repo
//var client = Utility.GetClient();
//var facet = new SearchFacet();
//facet.ItemTypes.Add(DdiItemType.Instrument);
//SearchResponse response = client.Search(facet);
//if (response.ReturnedResults > 1)
//{
// var repoInstruments = client.GetItems(response.Results);
//}
}
}
//mesh in variable set references
//I assume that there may be more than one corresponding dataset (i.e. its log prod, phys prod...) with same base name but with a hyphenated suffix
//get all the study units (from toplevel, assumed) and go through all its data collections
//find the logical products with a base name matching the data collection name and attach them to the study unit
//find physical data product and do the same, -I assume sdk physical product is ddi physical data product?-
//find physicalInstance with base alternate title matching data collection name and attach them to the study unit
var studyUnits = allItems.OfType<StudyUnit>();
foreach (var su in studyUnits)
{
foreach (var dc in su.DataCollections.Where(x => string.Compare(x.ItemName.Best, "") != 0))
{
var dcName = dc.ItemName.Best;
var matchingLogicalProducts = WorkingSet.OfType<LogicalProduct>().Where(x => string.Compare(x.ItemName.Best.Split('-')[0], dcName, ignoreCase: true) == 0);
var lpc = matchingLogicalProducts.Count();
//if (lpc == 1)
// su.AddChild(matchingLogicalProducts.First());
//else if (lpc > 1)
// Trace.WriteLine(" more than one logical product found for " + dcName);
if (lpc > 0)
foreach (var lp in matchingLogicalProducts)
su.AddChild(lp);
else
Trace.WriteLine(" no logical product found for " + dcName);
var matchingPhysicalProducts = WorkingSet.OfType<PhysicalProduct>().Where(x => string.Compare(x.ItemName.Best.Split('-')[0], dcName, ignoreCase: true) == 0);
var pdpc = matchingPhysicalProducts.Count();
//if (pdpc == 1)
// su.AddChild(matchingPhysicalProducts.First());
//else if (pdpc > 1)
// Trace.WriteLine(" more than one physical data product found for " + dcName);
if (pdpc > 0)
foreach (var pp in matchingPhysicalProducts)
su.AddChild(pp);
else
Trace.WriteLine(" no physical data product found for " + dcName);
var matchingPhysicalInstances = WorkingSet.OfType<PhysicalInstance>().Where(x => string.Compare(x.DublinCoreMetadata.AlternateTitle.Best.Split('-')[0], dcName, ignoreCase: true) == 0);
var pic = matchingPhysicalInstances.Count();
//if (pic == 1)
// su.AddChild(matchingPhysicalInstances.First());
//else if (pic > 1)
// Trace.WriteLine(" more than one physical instance found for " + dcName);
if (pic > 0)
foreach (var pi in matchingPhysicalInstances)
su.AddChild(pi);
else
Trace.WriteLine(" no physical instance found for " + dcName);
var matchingResourcePackages = WorkingSet.OfType<ResourcePackage>().Where(x => string.Compare(x.DublinCoreMetadata.AlternateTitle.Best.Split('-')[0], dcName, ignoreCase: true) == 0);
var rpc = matchingResourcePackages.Count();
//if (rpc == 1)
// su.AddChild(matchingResourcePackages.First());
//else if (rpc > 1)
// Trace.WriteLine(" more than one resource package found for " + dcName);
if (rpc > 0)
foreach (var rp in matchingResourcePackages)
su.AddChild(rp);
else
Trace.WriteLine(" no resource package found for " + dcName);
}
}
// Add the items to the working set.
WorkingSet.AddRange(allItems);
}
public void Execute()
{
// Load the DDI 3.2 file.
if (!System.IO.File.Exists(fileName))
{
//throw new System.Exception("...Missing file: " + fileName);
Trace.WriteLine(" missing file: " + fileName);
return;
}
var validator = new DdiValidator(fileName, DdiFileFormat.Ddi32);
bool isValid = validator.Validate();
var doc = validator.ValidatedXDocument;
var deserializer = new Ddi32Deserializer();
var harmonized = deserializer.HarmonizeIdentifiers(doc, DdiFileFormat.Ddi32);
var instance = deserializer.GetDdiInstance(doc.Root);
// Get a list of all items contained in the DdiInstance.
var gatherer = new ItemGathererVisitor();
instance.Accept(gatherer);
var allItems = gatherer.FoundItems;
//test if there is a caddies-style question scheme (non-grid)
//in which case add parameters
var questionSchemes = allItems.OfType<QuestionScheme>().Where(x => string.Compare(x.ItemName.Best.Substring(x.ItemName.Best.Length - 5, 5), "_qs01") == 0);
if (questionSchemes.Count() != 0)
{
var questionItems = questionSchemes.First().Questions;
foreach (var qi in questionItems)
{
var p = new Parameter();
p.ParameterType = InstrumentParameterType.Out;
p.Name.Add("en-GB", "p_" + qi.ItemName.Best);
qi.OutParameters.Add(p);
}
//I assume that there are the corresponding caddies question constructs
//add an InParameter based on the first (the only) OutParameter of its QuestionItem,
//an OutputParameter based on the construct name
//and a binding between the two
var questionConstructs = allItems.OfType<QuestionActivity>();
foreach (var qc in questionConstructs)
{
if (qc.Question != null)
{
var p = new Parameter();
p.ParameterType = InstrumentParameterType.In;
p.Name.Add("en-GB", qc.Question.OutParameters.First().Name.Best);
qc.InParameters.Add(p);
var p2 = new Parameter();
p2.ParameterType = InstrumentParameterType.Out;
p2.Name.Add("en-GB", "p_" + qc.ItemName.Best);
qc.OutParameters.Add(p2);
var b = new Binding();
//b.SourceParameter = p;
//b.TargetParameter = p2;
//qc.Bindings.Add(b);
}
else if (qc.QuestionGrid != null)
{
continue;
}
else
{
Trace.WriteLine(" question construct with no source");
}
}
}
// Add the items to the working set.
WorkingSet.AddRange(allItems);
}
