private void Download()
{
try
{
string Fail = "";
if (Directory.Exists(ParentDirectory))
{
DirectoryInfo Folder = new DirectoryInfo(ParentDirectory);
FileInfo[] Child = Folder.GetFiles("*");
Prolongation.NewFile(ParentDirectory + "\\" + Format);
System.Threading.Tasks.Parallel.For(0, Child.Count(), (i) =>
{
if (Child[i].Name != "PrimersTable.txt" && Child[i].Name != "Null.txt" && Child[i].Name != "LocationTable.txt")
{
if (!Advanced.GetFile(ParentDirectory + "\\" + Child[i].Name, ParentDirectory + "\\" + Format + "\\" + Child[i].Name, Format))
{
Fail += Child[i].Name + ",";
}
}
});
if (Fail != "")
{
MessageBox.Show("Number: " + Fail + "download failed");
}
else
{
MessageBox.Show("Download Success");
}
}
else
{
MessageBox.Show("Can't find " + Format + " Floder");
}
}
catch (Exception)
{
MessageBox.Show("There is something wrong. Please try again");
}
}
static public Advanced.SameLocation MatchCountry(Advanced.SameLocation samelocation, SQLiteConnection connection)
{
SQLiteCommand sqlcommand = new SQLiteCommand("SELECT * FROM CountryTable WHERE Country = '" + samelocation.Location + "'", connection);
if (sqlcommand.ExecuteScalar() != null)
{
SQLiteDataReader reader = sqlcommand.ExecuteReader();
while (reader.Read())
{
samelocation.Lng = reader.GetString(reader.GetOrdinal("Lng"));
samelocation.Lat = reader.GetString(reader.GetOrdinal("Lat"));
}
}
else
{
samelocation = Advanced.GetLatLng(samelocation, 0);
AddCountry(samelocation, connection);
}
return(samelocation);
}
private void Output()
{
int error = 0;
try
{
ParentDirectory = FileName.Substring(0, FileName.TrimEnd('\\').LastIndexOf('\\'));
name = FileName.Replace(ParentDirectory, "").Split('.')[0];
foreach (var a in Check)
{
if (a == '1')
{
string SamePrimersPath = ParentDirectory + name + "_SamePrimers\\";
Prolongation.NewFile(SamePrimersPath);
System.Threading.Tasks.Parallel.For(0, Cache.DnaBlock.Count, (i) => { Cache.DnaBlock[i] = Basic.GetPrimers(Cache.DnaBlock[i]); });
List <Advanced.SamePrimers> SamePrimers = Advanced.SelectPrimers(new List <Basic.DnaBlock>(Cache.DnaBlock.ToArray()));
int Null = -1;
FileStream File1 = new FileStream(SamePrimersPath + "PrimersTable.txt", FileMode.Create);
StreamWriter Writer1 = new StreamWriter(File1);
for (int i = 0; i < SamePrimers.Count; i++)
{
if (SamePrimers[i].Fwd_seq != null)
{
for (int j = 0; j < SamePrimers[i].Fwd_seq.Count; j++)
{
if (j == 0)
{
Writer1.WriteLine(i + " " + SamePrimers[i].Fwd_seq[j] + " " + SamePrimers[i].Rev_seq[j]);
}
else
{
Writer1.WriteLine(" " + SamePrimers[i].Fwd_seq[j] + " " + SamePrimers[i].Rev_seq[j]);
}
}
Writer1.WriteLine();
}
else
{
Null = i;
}
}
Writer1.Flush();
Writer1.Close();
File1.Close();
System.Threading.Tasks.Parallel.For(0, SamePrimers.Count, (i) =>
{
FileStream File;
if (i != Null)
{
File = new FileStream(SamePrimersPath + i + ".txt", FileMode.Create);
}
else
{
File = new FileStream(SamePrimersPath + "Null.txt", FileMode.Create);
}
StreamWriter Writer = new StreamWriter(File);
foreach (string Version in SamePrimers[i].Version)
{
Writer.WriteLine(Version);
}
Writer.Flush();
Writer.Close();
File.Close();
});
}
if (a == '2')
{
string SameOrganismPath = ParentDirectory + name + "_SameOrganism\\";
Prolongation.NewFile(SameOrganismPath);
System.Threading.Tasks.Parallel.For(0, Cache.DnaBlock.Count, (i) => { Cache.DnaBlock[i] = Basic.GetOrganism(Cache.DnaBlock[i]); });
List <Advanced.SameOrganism> SameOrganism = Advanced.SelectOrganism(new List <Basic.DnaBlock>(Cache.DnaBlock.ToArray()));
System.Threading.Tasks.Parallel.For(0, SameOrganism.Count, (i) =>
{
FileStream File = new FileStream(SameOrganismPath + SameOrganism[i].Organism.Replace("/", " ").Replace(":", "-") + ".txt", FileMode.Create);
StreamWriter Writer = new StreamWriter(File);
foreach (string Version in SameOrganism[i].Version)
{
Writer.WriteLine(Version);
}
Writer.Flush();
Writer.Close();
File.Close();
});
}
if (a == '3')
{
string SameCountryPath = ParentDirectory + name + "_SameCountry\\";
Prolongation.NewFile(SameCountryPath);
System.Threading.Tasks.Parallel.For(0, Cache.DnaBlock.Count, (i) => { Cache.DnaBlock[i] = Basic.GetLocation(Cache.DnaBlock[i]); });
OutputLocation(SameCountryPath, Cache.DnaBlock);
List <Advanced.SameLocation> SameCountry = Advanced.SelectCountry(new List <Basic.DnaBlock>(Cache.DnaBlock.ToArray()));
System.Threading.Tasks.Parallel.For(0, SameCountry.Count, (i) =>
{
FileStream File;
if (SameCountry[i].Location != null)
{
File = new FileStream(SameCountryPath + SameCountry[i].Location.Replace("/", " ").Replace(":", "-") + ".txt", FileMode.Create);
}
else
{
File = new FileStream(SameCountryPath + "Null.txt", FileMode.Create);
}
StreamWriter Writer = new StreamWriter(File);
foreach (string Version in SameCountry[i].Version)
{
Writer.WriteLine(Version);
}
Writer.Flush();
Writer.Close();
File.Close();
});
}
if (a == '4')
{
string SameCityPath = ParentDirectory + name + "_SameCity\\";
Prolongation.NewFile(SameCityPath);
System.Threading.Tasks.Parallel.For(0, Cache.DnaBlock.Count, (i) => { Cache.DnaBlock[i] = Basic.GetLocation(Cache.DnaBlock[i]); });
OutputLocation(SameCityPath, Cache.DnaBlock);
List <Advanced.SameLocation> SameCity = Advanced.SelectLocation(new List <Basic.DnaBlock>(Cache.DnaBlock.ToArray()));
List <Advanced.SameLocation> SameLatLngCity = Advanced.SelectLatLng(new List <Basic.DnaBlock>(Cache.DnaBlock.ToArray()));
System.Threading.Tasks.Parallel.For(0, SameCity.Count, (i) =>
{
if (SameCity[i].Location != null && error <= 0)
{
SameCity[i] = Advanced.GetCityLatLng(SameCity[i]);
if (SameCity[i].Lat == "NetworkError")
{
error++;
}
}
});
System.Threading.Tasks.Parallel.For(0, SameLatLngCity.Count, (i) =>
{
if (SameLatLngCity[i].Location != null && error <= 0)
{
SameLatLngCity[i] = Advanced.GetLatLngCityLatLng(SameLatLngCity[i]);
if (SameLatLngCity[i].Lat == "NetworkError")
{
error++;
}
}
});
if (error <= 0)
{
for (int i = SameCity.Count() - 1; i >= 0; i--)
{
for (int j = SameLatLngCity.Count() - 1; j >= 0; j--)
{
if (SameCity[i].Location == SameLatLngCity[j].Location)
{
var Temp = SameCity[i];
Temp.Version = SameCity[i].Version.Union(SameLatLngCity[j].Version).ToList <string>();
SameCity[i] = Temp;
SameLatLngCity.RemoveAt(j);
}
}
}
if (SameCity.Count() > 1)
{
for (int i = SameCity.Count() - 1; i > 0; i--)
{
int j = i - 1;
while (j >= 0)
{
if (SameCity[i].Location == SameCity[j].Location)
{
var Temp = SameCity[i];
Temp.Version = SameCity[i].Version.Union(SameCity[j].Version).ToList <string>();
SameCity[i] = Temp;
SameCity.RemoveAt(j);
i--;
}
j--;
}
}
}
System.Threading.Tasks.Parallel.For(0, SameCity.Count, (i) =>
{
FileStream File;
if (SameCity[i].Lat != null)
{
File = new FileStream(SameCityPath + SameCity[i].Location.Replace("/", " ").Replace(":", "-") + ".txt", FileMode.Create);
StreamWriter Writer = new StreamWriter(File);
foreach (string Version in SameCity[i].Version)
{
Writer.WriteLine(Version);
}
Writer.Flush();
Writer.Close();
File.Close();
}
});
}
}
if (a == '5')
{
string SameLatLonPath = ParentDirectory + name + "_SameLatLon\\";
Prolongation.NewFile(SameLatLonPath);
System.Threading.Tasks.Parallel.For(0, Cache.DnaBlock.Count, (i) => { Cache.DnaBlock[i] = Basic.GetLocation(Cache.DnaBlock[i]); });
OutputLocation(SameLatLonPath, Cache.DnaBlock);
List <Advanced.SameLocation> SameLatLon = Advanced.SelectLatLng(new List <Basic.DnaBlock>(Cache.DnaBlock.ToArray()));
System.Threading.Tasks.Parallel.For(0, SameLatLon.Count, (i) =>
{
FileStream File;
if (SameLatLon[i].Lat != null)
{
File = new FileStream(SameLatLonPath + SameLatLon[i].Lat + "," + SameLatLon[i].Lng + ".txt", FileMode.Create);
}
else
{
File = new FileStream(SameLatLonPath + "Null.txt", FileMode.Append);
}
StreamWriter Writer = new StreamWriter(File);
foreach (string Version in SameLatLon[i].Version)
{
Writer.WriteLine(Version);
}
Writer.Flush();
Writer.Close();
File.Close();
});
}
}
if (error > 0)
{
MessageBox.Show("Classify City Failed,Classify Others Success");
}
else
{
MessageBox.Show("ClassifySuccess");
}
}
catch (Exception)
{
MessageBox.Show("There is something wrong. Please try again");
}
}
private void BuildMap()
{
try
{
System.Threading.Tasks.Parallel.For(0, Cache.DnaBlock.Count, (i) => { Cache.DnaBlock[i] = Basic.GetLocation(Cache.DnaBlock[i]); });
Cache.SameCountry = Advanced.SelectCountry(new List <Basic.DnaBlock>(Cache.DnaBlock.ToArray()));
Cache.SameCity = Advanced.SelectLocation(new List <Basic.DnaBlock>(Cache.DnaBlock.ToArray()));
Cache.SameLatLng = Advanced.SelectLatLng(new List <Basic.DnaBlock>(Cache.DnaBlock.ToArray()));
Cache.SameLatLngCity = Advanced.SelectLatLng(new List <Basic.DnaBlock>(Cache.DnaBlock.ToArray()));
int error = 0;
System.Threading.Tasks.Parallel.For(0, Cache.SameCountry.Count, (i) =>
{
if (Cache.SameCountry[i].Location != null)
{
Cache.SameCountry[i] = Prolongation.Sql.MatchCountry(Cache.SameCountry[i], Cache.Connection);
if (Cache.SameCountry[i].Lat == "NetworkError")
{
error++;
}
}
});
System.Threading.Tasks.Parallel.For(0, Cache.SameCity.Count, (i) =>
{
if (Cache.SameCity[i].Location != null)
{
Cache.SameCity[i] = Advanced.GetCityLatLng(Cache.SameCity[i]);
if (Cache.SameCity[i].Lat == "NetworkError")
{
error++;
}
}
});
System.Threading.Tasks.Parallel.For(0, Cache.SameLatLngCity.Count, (i) =>
{
if (Cache.SameLatLngCity[i].Location != null)
{
Cache.SameLatLngCity[i] = Advanced.GetLatLngCityLatLng(Cache.SameLatLngCity[i]);
if (Cache.SameLatLngCity[i].Lat == "NetworkError")
{
error++;
}
}
});
if (error > 0)
{
MessageBox.Show("Network error. Please try again");
Cache.SameCountry = null;
Cache.SameLatLng = null;
return;
}
MessageBox.Show("Build Success");
}
catch (Exception)
{
MessageBox.Show("There is something wrong. Please try again");
Cache.SameCountry = null;
Cache.SameLatLng = null;
}
}