public static ModelCopyContext ForConstructing(DistillationContext context) { return new ModelCopyContext(context); }
//--------------------------------------------------------------------------
// Construction
public ConcatenatedSequence(DistillationContext context) : base(context)
{
}
//---------------------------------------------------------------------------------------
// Construction
//---------------------------------------------------------------------------------------
ModelCopyContext(DistillationContext context)
{
this.DistillationContext = context;
}
public static INucleotideSequence Create(DistillationContext context, SymbolTable symtab, INucleotideSequence target)
{
return new ComplementedSequence(context, symtab, target);
}
//--------------------------------------------------------------------------
// Construction
public ExtractedSequence(DistillationContext context, SymbolTable symtab, INucleotideSequence target, int intFirst, int cnt) : base(context, symtab, target)
{
this.id = EnumeratedNucleotideSequence.NewId();
//
StringExtractor.Confine(0, target.Length, ref intFirst, ref cnt); // note, though: target's length can change
this.stringExtractor = new StringExtractor(intFirst, cnt);
//
this.isOurDecoration = dec =>
{
if (dec.Ich >= this.stringExtractor.IchFirst && dec.Ich < this.stringExtractor.IchMax)
return true;
if (this.stringExtractor.IchFirst == 0 && dec.Ich < 0)
return true;
if (this.stringExtractor.IchMax >= this.target.Length && dec.Ich == this.target.Length)
return true;
return false;
};
}
public static INucleotideSequence Create(IReverseSequenceIdContainer idmgr, DistillationContext context, SymbolTable symtab, INucleotideSequence target)
{
return new ReversedSequence(idmgr, context, symtab, target);
}
//--------------------------------------------------------------------------
// Construction
ComplementedSequence(DistillationContext context, SymbolTable symtab, INucleotideSequence target) : base(context, symtab, target)
{
}
//--------------------------------------------------------------------------
// Construction
ReversedSequence(IReverseSequenceIdContainer idmgr, DistillationContext context, SymbolTable symtab, INucleotideSequence target) : base(context, symtab, target)
{
this.id = idmgr.IdForReversedTarget(target.Id);
}
//--------------------------------------------------------------------------
// Construction
public ComputedSequence(DistillationContext context, SymbolTable symtab, INucleotideSequence target) : base(context, symtab)
{
this.target = target;
}
//--------------------------------------------------------------------------
// Construction
public EnumeratedNucleotideSequence(DistillationContext context, SymbolTable symtab) : base(context, symtab)
{
this.id = NewId();
}
//------------------------------------------------------------------
// Construction
protected SequenceBase(DistillationContext context)
{
this.context = context;
}
// ------------------------------------------------------------------
// Construction
protected DomainSequenceBase(DistillationContext context, SymbolTable symtab) : base(context)
{
this.symtab = symtab;
this.properties = new PropertyBag(); // ALWAYS unique to this sequence instance
}
